These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence [CCAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCACGCCCGAGGCTACGAGTTCCTGAACCAG] [+] EMBL BU806566 [CCAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCACGCCCGAGTCTACGAGTTC ] [+] EMBL BU808192 [ CAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCACGCCCGA ] [+] EMBL BU808248 [ GTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTTTTTTGTGTTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGGAGCTGCTAAGTGTTATTATTATCACGCCCCGAGTTACGAGTTCCTGAACCAG] consensusID : consensus_2593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 445 fasta sequence [GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGTCTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACG] [+] EMBL BU805819 [GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGTCTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACG] [+] EMBL FR0060274 [ TCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGGCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTTTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGA ] [+] EMBL FR0059189 [ CGGAGGGACTTAGCGGGTCGGGACCGCGAGTCCAAAGGGGAGAAGTCAAAGGAGACCGCCCCGCACCACGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGGGCTCTACGGGCC ] [+] EMBL FR0063901 [ AGCGGG CGGGACC CGAGTCCAAATTTG GAAGGCAAAGGAGACCGCCCGGGAGGATGTGGAGATGCCGGAGGAGGAGACGCCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGGGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGGGAATAAAACCATCTGTGGTTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTTCCTG ] [+] EMBL FR0063936 [ CGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGA AGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGGCTGAACACTAATGTTGTGAATAAAACCATCTGGGGTTTCTTCACCAACAACAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2593#0 --------------------------------------CCAGTCATTGTCGGAGCAAA-- 20 consensus_2593#1 GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGT 60 * * * * **** ** consensus_2593#0 -----AGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGC 75 consensus_2593#1 CTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGC 120 ******************************************************* consensus_2593#0 GAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAG 135 consensus_2593#1 GAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAG 180 ************************************************************ consensus_2593#0 GAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATC 195 consensus_2593#1 GAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATC 240 ************************************************************ consensus_2593#0 AAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTC 255 consensus_2593#1 AAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTC 300 ************************************************************ consensus_2593#0 CGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAA 315 consensus_2593#1 CGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAA 360 ************************************************************ consensus_2593#0 ACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTG 375 consensus_2593#1 ACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTG 420 ************************************************************ consensus_2593#0 GAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCA 435 consensus_2593#1 GAGGAGCCGATGGAGATGGCCGACG----------------------------------- 445 ************************* consensus_2593#0 GCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCAC 495 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 CTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAA 555 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 ATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCAC 615 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 GCCCGAGGCTACGAGTTCCTGAACCAG 642 consensus_2593#1 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |