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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1205 fasta sequence
[GCTTTGCTTCGATGTAACGTTTCCACCTCATCTTTGTTCATTCAAATTATATGGTTAATCTATATGACGTTTTGGGACAACTTGTGCGCTAGGTGGTAGTGTTTGCAACCGGTTGGTTCACTTTGGATGTTTCTATTTGAACCACTAGAGGAGCCCTTTGGCGTCATAGGAAGACTTCGGTATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGGACCCTAATAATATTCTGCTGGCCGCTGGATCCTGTGACTTCAAATGCAGGGTGTTCTCAGCCTACATTAAGGAGGTGGAAGAGAAACCAGGTCCCACACCCTGGGGCAGCAAGATGCCATTTGGGGCTGTTCTTGCAGAATTTGGCGGAGCGGGTGGAGGGGGCTGGGTCCATTCAGTCTCTTTCTCAGCCTCTGGTAATCGCCTGGCCTGGGTCAGTCACGACAGCACTGTTACTGTGGGGGACAGTTCTAAGACTGCCAGT]
[+] EMBL CA332704 [GCTTTGCTTCGATGTAACGTTTCCACCTCATCTTTGTTCATTCAAATTATATGGTTAATCTATATGACGTTTTGGGACAACTTGTGCGCTAGGTGGTAGTGTTTGCAACCGGTTGGTTCACTTTGGATGTTTCTATTTGAACCACTAGAGGAGCCCTTTGGCGTCATAGGAAGACTTCGGTATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCCGCCACGCGTGGAATCGTGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAAC ]
[+] EMBL CA333206 [ GAAGACTTCGGTATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGA ]
[+] EMBL BU805157 [ GATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGG ]
[+] EMBL CA590764 [ TGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCACGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGG ]
[+] EMBL CA590937 [ GTCAGCCAGACATCCGCGGGTTTTACTGCCGAATTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACG AGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGTAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTT ]
[+] EMBL FR0059603 [ TCCCGTTCATATCCTTCTTGCCATGGGGACACCCCCTCTACATTCCTGGACTAACCCCCNTTGACTGACCAGAGTCCGCGAATTCAAGCCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGGTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGGTTCTGCTGGAACCCATCACCTGCCACGCGGGGAATCGCGACCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGGGGCAACCAGGGGCTAAAGACCCATGAGCTGGGAGAGCA ]
[+] EMBL BU808094 [ cAGACGCCTCCAATCGGGGAAAACAG AGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATT ACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGCACCCTAATAATATTCTGCTGGCCGCTGGATCC ]
[+] EMBL FR0056902 [ TGGGGAACACGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGGACCCTAATAATATTCTGCTGGCCGCTGGATCCTGTGACTTCAAATGCAGGGTGTTCTCAGCCTACATTAAGGAGGTGGAAGAGAAACCAGGTCCCACACCCTGGGGCAGCAAGATGCCATTTGGGGCTGTTCTTGCAGAATTTGGCGGAGCGGGTGGAGGGGGCTGGGTCCATTCAGTCTCTTTCTCAGCCTCTGGTAATCGCCTGGCCTGGGTCAGTCACGACAGCACTGTTACTGTGGGGGACAGTTCTAAGACTGCCAGT]
consensusID : consensus_2603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[GTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAG]
[+] EMBL CA591069 [GTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2603#0 GCTTTGCTTCGATGTAACGTTTCCACCTCATCTTTGTTCATTCAAATTATATGGTTAATC 60
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 TATATGACGTTTTGGGACAACTTGTGCGCTAGGTGGTAGTGTTTGCAACCGGTTGGTTCA 120
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 CTTTGGATGTTTCTATTTGAACCACTAGAGGAGCCCTTTGGCGTCATAGGAAGACTTCGG 180
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 TATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCA 240
consensus_2603#1 ---------------------------GTTGCTAGCGCGATGATGCTAAGCTAGCTGTCA 33
*********************************
consensus_2603#0 GCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTT 300
consensus_2603#1 GCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTT 93
************************************************************
consensus_2603#0 CTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTC 360
consensus_2603#1 CTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTC 153
************************************************************
consensus_2603#0 CGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGG 420
consensus_2603#1 CGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGG 213
************************************************************
consensus_2603#0 CTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCAC 480
consensus_2603#1 CTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCAC 273
************************************************************
consensus_2603#0 ACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGA 540
consensus_2603#1 ACCCA------------------------------------------------------- 278
*****
consensus_2603#0 ATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGA 600
consensus_2603#1 ----------------AATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGA 322
********************************************
consensus_2603#0 AGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAG 660
consensus_2603#1 AGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAG 382
************************************************************
consensus_2603#0 GTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCT 720
consensus_2603#1 GTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCT 442
************************************************************
consensus_2603#0 ACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACC 780
consensus_2603#1 ACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACC 502
************************************************************
consensus_2603#0 GAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCG 840
consensus_2603#1 GAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCG 562
************************************************************
consensus_2603#0 CTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACA 900
consensus_2603#1 CTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACA 622
************************************************************
consensus_2603#0 TCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGGACCCTAATAATATTCTGC 960
consensus_2603#1 TCAAG------------------------------------------------------- 627
*****
consensus_2603#0 TGGCCGCTGGATCCTGTGACTTCAAATGCAGGGTGTTCTCAGCCTACATTAAGGAGGTGG 1020
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 AAGAGAAACCAGGTCCCACACCCTGGGGCAGCAAGATGCCATTTGGGGCTGTTCTTGCAG 1080
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 AATTTGGCGGAGCGGGTGGAGGGGGCTGGGTCCATTCAGTCTCTTTCTCAGCCTCTGGTA 1140
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 ATCGCCTGGCCTGGGTCAGTCACGACAGCACTGTTACTGTGGGGGACAGTTCTAAGACTG 1200
consensus_2603#1 ------------------------------------------------------------
consensus_2603#0 CCAGT 1205
consensus_2603#1 -----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |