|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1102 fasta sequence
[AAGATACAACCTGTATCTGCTTCTCTGCTTTCTTAGTATTGTTATATTGAATTTAAAGTCTAATTAATTAATTAATTAAACTAATTCATTTCACTTCCATAATTAAAAAAAGAGGGGTTGTTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCATCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAGAGGAATTTGTGCTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGCTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA-GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAGGCCGGCAAGTATGAAAA-CGCCATCCAATGTTACACAGAGGCCATCGGTCTGTGTCCCAATGAGCAGAAGACGGACTTATCAACGTTTTATCAGAACAGAGCAGCTGCCTATGAACAGCAGTTGCAATGGACAGAAGTAGTACAGGACTGCTCTAATGCCGTCGAACTGAATCCACGCTACATAAAGGCGCTGTTCAGACGAGCCAAAGCTCTGGAAAAGTTGGACAACAAGAAGGAATGCCTAGAGGACGTCACAGCTGTGTGTATTCTCGAGGCCTTCCAGAACCAACTGAGCATGTTGCTGGCAGACAGGGTGCTGAAGCAGCTGGGAAAAGAGAAGGCTAAGGAAAAATACAAGAACCGCGAGCCAATGATGCCCTCTCCTCAGTTCATAAAGTCTTATTTTAGCTCATTCACTGATGACATCATCTCAAAGCCCCTGCAGAAGGGGGAGAAGAAAGACGAAGATAAAGACAACGAGGGTGAAGCAGCGGAGGTCACTGAGAGATCTGGC]
[+] EMBL CA590616 [AAGATACAACCTGTATCTGCTTCTCTGCTTTCTTAGTATTGTTATATTGAATTTAAAGTCTAATTAATTAATTAATTAAACTAATTCATTTCACTTCCATAATTAAAAAAAGAGGGGTTGTTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCATCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAGAGGAATTTGTGCTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGTTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAAC ]
[+] EMBL BU807656 [ CAACCTGTATCTGCTTCTCTGCTTTCTTAGTATTGTTATATTGAATTTAAAGTCTAATTAATTAATTAATTAAACTAATTCATTTCACTTCCATAATTAAAAAAAGAGGGGTTGTTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCATCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAGAGGAATTTGTGTTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGTTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAAGCCGGCAAGTATGAAAA CGCCATCCAATGTTACACAGAGGCCATCGGT ]
[+] EMBL BU807460 [ ATCTGCTTCTCTGCTTTCTTAGTATTGTTATATTGAATTTAAAGTCTAATTAATTAATTAATTAAACTAATTCATTTCACTTCCATAATTAAAAAAAGAGGGGTTGTTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCATCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAGAGGAATTTGTGCTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGTTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGC ]
[+] EMBL CA590283 [ TTCTTAGTATTGTTATATTGAATTTAAAGTCTAATTAATTAATTAATTAAACTAATTCATTTCACTTCCATAATTAAAAAAAGAGGGGTTGTTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCATCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAGAGGAATTTGTGCTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGCTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACCAGTACTTCAAGGCCGGCAAGTATGAAAA CGCCATCCAATGTTACACAGAGGCCATC ]
[+] EMBL FR0060519 [ ATTTCACTTCCATAATTAGAAAAAGAGGGGTTGTTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCATCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAGAGGAATTTGTGCTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGT ]
[+] EMBL CA845892 [ GCCGTTTGGAGA CATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGCTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAGGCCGGCAAGTATGAAAA CGCCATCCAATGTTACACAGAGGCCATCGGTCTGTGTCCCAATGAGCAGAAGACGGACTTATCAACGTTTTATCAGAACAGAGCAGCTGCCTATGAACAGCAGTTGCAATGGACAGAAGTAGTACAGGACTGCTCTAATGCCGTCGAACTGAATCCACGCTACATAAAGGCGCTGTTCAGACGAGCCAAAGCTCTGGAAAAGTTGGACAACAAGAAGGAATGCCTAGAGGACGTCACAGCTGTGTGTATTCTCGAGGCCTTCCAGAACCAACTGAGCATGTTGCTGGCAGACAGGGTGCTGAAGCAGCTGGGAAAAGAGAAGGCTAAGGAAAAATACAAGAACCGCGAGCCAATGATGCCCTCTCCTCAGTTCATAAAGTCTTATTTTAGCTCATTCACTGATGACATCATCTCAAAGCCCCTGCAGAAGGGGGAGAAGAAAGACGAAGATAAAGACAACGAGGGTGAAGCAGCGGAGGTCACTGAGAGATCTGGC]
[+] EMBL FR0058144 [ aTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGCTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCGTAGCA GGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAANAATAAGGGCAACAAGTACTTCAAGGCCGGCAAGTATGAAAA CGCCATCCAATGTTACACAGAGGCCATCGGTCTGTGTCCCAATGAGCAGAAGACGGACTTATCAACGTTTTATCAGAACAGAG ]
[+] EMBL FR0060523 [ gctGCAGCTGCGAGTACTTTTTTGGGCTCCTATAGCGCTGGTTGTGGGGGCGATTTATCTCTGGAATCGTAGCAGGGAAGAAGAAAAGTAAAGCCGGCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCATCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAGGTACTTTAAGGCCCGCAAGTATGAAAACCCCCATCCAAT ]
consensusID : consensus_2609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[CTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGTTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTATCTCTGGAATCGTAGCAGGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAGGCCGTTGCAATGGACAGAAGTAGTACAGGACTGCTCTAATGCCGTCGAACTGAATCCACGCTACATAAAGGCGCTGTTCAGACGAGCCAAAGCTCTGGAAAAGTTGGACAACAAGAAGGAATGCCTAGAGGACGTCACAGCTGTGTGTATTCTCGAGGCCTTCCAGAACCAACTGAGCATGTTGCTGGCAGACAGGGTGCTGAAGCAGCTGGGAAAAGAGAAGGCTAAGGAAAAATACAAGAACCGCGGGCCAATGATGCCCTCTCCTCAGTTCATAAAGTCTTATTTTAG]
[+] EMBL CA590566 [CTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGATCATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGTTGCCCCGCTGGCAGCTGGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTATCTCTGGAATCGTAGCAGGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAGTCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCCGTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAGGCCGTTGCAATGGACAGAAGTAGTACAGGACTGCTCTAATGCCGTCGAACTGAATCCACGCTACATAAAGGCGCTGTTCAGACGAGCCAAAGCTCTGGAAAAGTTGGACAACAAGAAGGAATGCCTAGAGGACGTCACAGCTGTGTGTATTCTCGAGGCCTTCCAGAACCAACTGAGCATGTTGCTGGCAGACAGGGTGCTGAAGCAGCTGGGAAAAGAGAAGGCTAAGGAAAAATACAAGAACCGCGGGCCAATGATGCCCTCTCCTCAGTTCATAAAGTCTTATTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2609#0 AAGATACAACCTGTATCTGCTTCTCTGCTTTCTTAGTATTGTTATATTGAATTTAAAGTC 60
consensus_2609#1 ------------------------------------------------------------
consensus_2609#0 TAATTAATTAATTAATTAAACTAATTCATTTCACTTCCATAATTAAAAAAAGAGGGGTTG 120
consensus_2609#1 ------------------------------------------------------------
consensus_2609#0 TTAGACTGGGAGAGCATCTCTGCTTCGTGTAGGCTGTTAAACTTCCGGACTACAATTCCA 180
consensus_2609#1 ------------------------------------------------------------
consensus_2609#0 TCCATCCACAATTCCGTTTCCCGTGATGCTTCAGCGTGACCTCGCGGACAACACAGGAAG 240
consensus_2609#1 ------------------------------------------------------------
consensus_2609#0 AGGAATTTGTGCTTTCGCTCACGCTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGAT 300
consensus_2609#1 -----------------------CTGCTCGCTGTTTGCTAACTATCAGGCGGTTGGAGAT 37
*************************************
consensus_2609#0 CATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGCTGCCCCGCTGGCAGCT 360
consensus_2609#1 CATGGCTGCTTCTAAATTAGTGGAGCTGGAGGCCGGGACCGGGTTGCCCCGCTGGCAGCT 97
******************************************* ****************
consensus_2609#0 GGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATTTATCTCTGGAATCG 420
consensus_2609#1 GGCACTACTAATAGGGGCTCCTATAGCGCTGGGTGTGGGGGCGATT-ATCTCTGGAATCG 156
********************************************** *************
consensus_2609#0 TAGCAGGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAG 480
consensus_2609#1 TAGCAGGAAGAAGAAAAGTAAAGCCGCCGGCGAACGGAAAACACCAGAAGGCAGCGCCAG 216
************************************************************
consensus_2609#0 TCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCC 540
consensus_2609#1 TCCAGTGCAGGGCCAAGACGGCGCAGCACGAACCAACCAGGAGCAGGATAACAGGAGCCC 276
************************************************************
consensus_2609#0 GTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAGGCCGGCAAGTA 600
consensus_2609#1 GTTGGAGCGTGCTCAAGCAGCGAAAAATAAGGGCAACAAGTACTTCAAGGCCG------- 329
*****************************************************
consensus_2609#0 TGAAAACGCCATCCAATGTTACACAGAGGCCATCGGTCTGTGTCCCAATGAGCAGAAGAC 660
consensus_2609#1 ------------------------------------------------------------
consensus_2609#0 GGACTTATCAACGTTTTATCAGAACAGAGCAGCTGCCTATGAACAGCAGTTGCAATGGAC 720
consensus_2609#1 -------------------------------------------------TTGCAATGGAC 340
***********
consensus_2609#0 AGAAGTAGTACAGGACTGCTCTAATGCCGTCGAACTGAATCCACGCTACATAAAGGCGCT 780
consensus_2609#1 AGAAGTAGTACAGGACTGCTCTAATGCCGTCGAACTGAATCCACGCTACATAAAGGCGCT 400
************************************************************
consensus_2609#0 GTTCAGACGAGCCAAAGCTCTGGAAAAGTTGGACAACAAGAAGGAATGCCTAGAGGACGT 840
consensus_2609#1 GTTCAGACGAGCCAAAGCTCTGGAAAAGTTGGACAACAAGAAGGAATGCCTAGAGGACGT 460
************************************************************
consensus_2609#0 CACAGCTGTGTGTATTCTCGAGGCCTTCCAGAACCAACTGAGCATGTTGCTGGCAGACAG 900
consensus_2609#1 CACAGCTGTGTGTATTCTCGAGGCCTTCCAGAACCAACTGAGCATGTTGCTGGCAGACAG 520
************************************************************
consensus_2609#0 GGTGCTGAAGCAGCTGGGAAAAGAGAAGGCTAAGGAAAAATACAAGAACCGCGAGCCAAT 960
consensus_2609#1 GGTGCTGAAGCAGCTGGGAAAAGAGAAGGCTAAGGAAAAATACAAGAACCGCGGGCCAAT 580
***************************************************** ******
consensus_2609#0 GATGCCCTCTCCTCAGTTCATAAAGTCTTATTTTAGCTCATTCACTGATGACATCATCTC 1020
consensus_2609#1 GATGCCCTCTCCTCAGTTCATAAAGTCTTATTTTAG------------------------ 616
************************************
consensus_2609#0 AAAGCCCCTGCAGAAGGGGGAGAAGAAAGACGAAGATAAAGACAACGAGGGTGAAGCAGC 1080
consensus_2609#1 ------------------------------------------------------------
consensus_2609#0 GGAGGTCACTGAGAGATCTGGC 1102
consensus_2609#1 ----------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |