These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [CTCCCAGTTTGATCAGAGAAACACGGCAGCTGGGGTGCTGGTCTGGAAATGCACACCAAGCCCTGGGTCAGAGCCAGAGCCCGTCGTGACTACTGGGAGAACCTGAAGCCAGCCTCTGGCCGGCCCCTGTGCGCCTCCCTGTCTGCTCCCGATTGCTGGGGTGTCACAAAAGGTGACACTGCCCTCATGCAGCAGAAAGAAGCAACCACAAAGGACCAACTGAAGCAGCTGTTCGACCGCAAAAGCAACTAAGACAACTCTTCTCCTTCAGACCATGCAACATAGTCGAATCAAGCAAAAAGTGTGACCTGGCAGTGCACGGTGGTTTGCACTGTGTCTGTCCAGCGCTGCTGCTTACACCCATGAAATCTCCTCTTGAGACTGTGATTTGAACGAAGCCACAGTGAGTTCCCCACTCACAGTAGGTGTAGCACCGTGTCAAGATTGGC] [+] EMBL CA330160 [CTCCCAGTTTGATCAGAGAAACACGGCAGCTGGGGTGCTGGTCTGGAAATGCACACCAAGCCCTGGGTCAGAGCCAGAGCCCGTCGTGACTACTGGGAGAACCTGAAGCCAGCCTCTGGCCGGCCCCTGTGCGCCTCCCTGTCTGCTCCCGATTGCTGGGGTGTCACAAAAGGTGACACTGCCCTCATGCAGCAGAAAGAAGCAACCACAAAGGACCAACTGAAGCAGCTGTTCGACCGCAAAAGCAACTAAGACAACTCTTCTCCTTCAGACCATGCAACATAGTCGAATCAAGCAAAAAGTGTGACCTGGCAGTGCACGGTGGTTTGCACTGTGTCTGTCCAGCGCTGCTGCTTACACCCATGAAATCTCCTCTTGAGACTGTGATTTGAACGAAGCCACAGTGAGTTCCCCACTCACAGTAGGTGTAGCACCGTGTCAAGATTGGC] consensusID : consensus_261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [TGGAAATGCACACCAGAGCCCTGGGTGATAGTGGGAGCCGTCGTGACTACTGGGAGAACCTGAAGCCATCCTCTGGCCGGGCCCTGTGCGCCTCCCTGTCTGCTCCCAATTGCTGGGGTGTCACAAAATGTGAGACTGGCCTCCTGTGCCAGATATAAGCAACCACAAAGGACCAACTGAAGCAGCTG] [+] EMBL CA330109 [TGGAAATGCACACCAGAGCCCTGGGTGATAGTGGGAGCCGTCGTGACTACTGGGAGAACCTGAAGCCATCCTCTGGCCGGGCCCTGTGCGCCTCCCTGTCTGCTCCCAATTGCTGGGGTGTCACAAAATGTGAGACTGGCCTCCTGTGCCAGATATAAGCAACCACAAAGGACCAACTGAAGCAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_261#0 CTCCCAGTTTGATCAGAGAAACACGGCAGCTGGGGTGCTGGTCTGGAAATGCACACCA-A 59 consensus_261#1 -------------------------------------------TGGAAATGCACACCAGA 17 *************** * consensus_261#0 GCCCTGGGTCAGAGCCAGAGCCCGTCGTGACTACTGGGAGAACCTGAAGCCAGCCTCTGG 119 consensus_261#1 GCCCTGGGTGATAGTGGGAGCC-GTCGTGACTACTGGGAGAACCTGAAGCCATCCTCTGG 76 ********* * ** ***** ***************************** ******* consensus_261#0 CCGGCCCCTGTGCGCCTCCCTGTCTGCTCCCGATTGCTGGGGTGTCACAAAAGGTGACAC 179 consensus_261#1 CCGGGCCCTGTGCGCCTCCCTGTCTGCTCCCAATTGCTGGGGTGTCACAAAATGTGAGAC 136 **** ************************** ******************** **** ** consensus_261#0 TGCCCTCATGCAGCAGAAAGAAGCAACCACAAAGGACCAACTGAAGCAGCTGTTCGACCG 239 consensus_261#1 TGGCCTCCTGTGCCAGATATAAGCAACCACAAAGGACCAACTGAAGCAGCTG-------- 188 ** **** ** **** * ******************************** consensus_261#0 CAAAAGCAACTAAGACAACTCTTCTCCTTCAGACCATGCAACATAGTCGAATCAAGCAAA 299 consensus_261#1 ------------------------------------------------------------ consensus_261#0 AAGTGTGACCTGGCAGTGCACGGTGGTTTGCACTGTGTCTGTCCAGCGCTGCTGCTTACA 359 consensus_261#1 ------------------------------------------------------------ consensus_261#0 CCCATGAAATCTCCTCTTGAGACTGTGATTTGAACGAAGCCACAGTGAGTTCCCCACTCA 419 consensus_261#1 ------------------------------------------------------------ consensus_261#0 CAGTAGGTGTAGCACCGTGTCAAGATTGGC 449 consensus_261#1 ------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |