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Takifugu rubripes
cluster # 2615 cluster # 2615       Sequences # 9       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2615#0 length = 480 sequences # 8  
 consensus_2615#1 length = 377 sequences # 1  
consensusID : consensus_2615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 480
fasta sequence 
                              [CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCA-GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAAAAAAAAAACCCCGGGGGGGGCC]

[+] EMBL FR0057006            [CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGGAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGG                                                         ]
[+] EMBL FR0055602            [                  AGGTCATGAAAGCCCTCGACATCAACTTCGCCACCAGGAAAGATCGCGTCCCACCTGCACCAGACACAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAGACTACGAGGTCAACTTCACAATCGGCGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGCTGGNAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAA                                                                                                                                  ]
[+] EMBL FR0056712            [                               CCTCGACATCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAGTCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAGGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGGGTTGCAAA                                                                          ]
[+] EMBL FR0056993            [                                     CATCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACT                                ]
[+] EMBL CA845410             [                                       TCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACTTCCGTTAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATG                                       ]
[+] EMBL FR0056713            [                                                                                     AGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAGGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGGAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGTAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGAT                                        ]
[+] EMBL CA847147             [                                                                                                                                                                                                                                                                                   CCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCCAAAAAAAAAA                    ]
[+] EMBL FR0056922            [                                                                                                                                                                                                                                                                                              AACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAAAAAAAAAACCCCGGGGGGGGCC]




>consensus_2615#0
CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCAGAAAGA
TCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCC
AGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGG
AGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACA
AGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAG
GAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGA
AAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTA
TGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAAAAAAAAAACCCCGGGGGGGGCC

consensusID : consensus_2615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence 
                              [GTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGTTTCTGTTGCCTTTCTTTCAGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGAC]

[+] EMBL CA844995             [GTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGTTTCTGTTGCCTTTCTTTCAGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGAC]




>consensus_2615#1
GTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTC
AACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTC
ATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCC
AACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGTTTCTGTTGCCTTT
CTTTCAGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTG
AGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATA
GTAAAAAGATGTAAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2615#0      CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCAGAAAGA 60
consensus_2615#1      ------------------------------------------------------------
                                                                                  

consensus_2615#0      TCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCC 120
consensus_2615#1      --------------------------------GTCCAGAAAGGAGACAAGTTCGAGACCC 28
                                                      ****************************

consensus_2615#0      AGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGG 180
consensus_2615#1      AGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGG 88
                      ************************************************************

consensus_2615#0      AGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACA 240
consensus_2615#1      AGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACA 148
                      ************************************************************

consensus_2615#0      AGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAG 300
consensus_2615#1      AGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAG 208
                      ************************************************************

consensus_2615#0      GAGACCTCCTTCACCTGG----------------------AGATCACTGCTCTCGACAAA 338
consensus_2615#1      GAGACCTCCTTCACCTGGTTTCTGTTGCCTTTCTTTCAGGAGATCACTGCTCTCGACAAA 268
                      ******************                      ********************

consensus_2615#0      GTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGT 398
consensus_2615#1      GTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGT 328
                      ************************************************************

consensus_2615#0      GTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAA 458
consensus_2615#1      GTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGAC----------- 377
                      *************************************************           

consensus_2615#0      AAAAAAAACCCCGGGGGGGGCC 480
consensus_2615#1      ----------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)