These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence [TCGCTAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAGACGGCATTTGATGAGGCCATCGCTGAACTTGACACCTTGAACGAGGATTCCTACAAAGACAGCACCCTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCAGAAAACCAGGCAGATGAGGGGGAGACC] [+] EMBL CA588222 [TCGCTAGACGGAGGACGGAGGCTGAATCGTCCAGAGAAAAAAAACTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAGACGGCATTTGATGAGGCCATCGCTGAACTTGACACCTTGAACGAGGATTCCTACAAAGACAGCACCCTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCAGAAAACCAGGCAGATGAGGGGGAGACC] [+] EMBL CA590559 [ CGTCCAGAGAGAAAAAAGTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATG ] [+] EMBL BU808132 [ ttaaaAGTCACCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAATACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAGACGGCATTTGATGAa ] consensusID : consensus_2634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 648 fasta sequence [CGCTCAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACC-TGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGC] [+] EMBL CA590929 [CGCTCAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCACCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTACTACCTGAAAATGAAAGGCGATTATTTCAGATACC TGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAAC ] [+] EMBL BU807832 [ CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGTCTTTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACC TGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGC] [+] EMBL CA590026 [ CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACC ] [+] EMBL FR0058358 [ GATTAAAAGTCACCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAATAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGG GGTCTACCTGAAAATGAAAGGGGAATATTTCAGATACCTTGTCT ] [+] EMBL FR0059510 [ ATATTTGGGAGAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGAACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATG ] consensusID : consensus_2634#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCT] [+] EMBL BU807966 [CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2634#1 CGCTCAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAA 60 consensus_2634#2 ----CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAA 56 consensus_2634#0 ----TCGCTAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAG----------- 45 ** **************************************** consensus_2634#1 AGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCC 120 consensus_2634#2 AGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCC 116 consensus_2634#0 -------------TGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCC 92 *********************************************** consensus_2634#1 GAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGT 180 consensus_2634#2 GAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGT 176 consensus_2634#0 GAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGT 152 ************************************************************ consensus_2634#1 GGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGT 240 consensus_2634#2 GGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGT 236 consensus_2634#0 GGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGT 212 ************************************************************ consensus_2634#1 GCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGAC 300 consensus_2634#2 GCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGAC 296 consensus_2634#0 GCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGAC 272 ************************************************************ consensus_2634#1 AAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATC 360 consensus_2634#2 AAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATC 356 consensus_2634#0 AAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATC 332 ************************************************************ consensus_2634#1 TGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAG 420 consensus_2634#2 TGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCA----------------------- 393 consensus_2634#0 TGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAG 392 ************************************* consensus_2634#1 AGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCA 480 consensus_2634#2 ----------------------------------------GATACCTGTCTGAGGTTGCA 413 consensus_2634#0 AGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCA 452 ******************** consensus_2634#1 TCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTC 540 consensus_2634#2 TCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTC 473 consensus_2634#0 TCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTC 512 ************************************************************ consensus_2634#1 GACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAAC 600 consensus_2634#2 GACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAAC 533 consensus_2634#0 GACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAAC 572 ************************************************************ consensus_2634#1 TTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGC------------ 648 consensus_2634#2 TTCTCGGTCTTCT----------------------------------------------- 546 consensus_2634#0 TTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAG 632 ************* consensus_2634#1 ------------------------------------------------------------ consensus_2634#2 ------------------------------------------------------------ consensus_2634#0 ACGGCATTTGATGAGGCCATCGCTGAACTTGACACCTTGAACGAGGATTCCTACAAAGAC 692 consensus_2634#1 ------------------------------------------------------------ consensus_2634#2 ------------------------------------------------------------ consensus_2634#0 AGCACCCTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCAGAAAACCAG 752 consensus_2634#1 ------------------ consensus_2634#2 ------------------ consensus_2634#0 GCAGATGAGGGGGAGACC 770 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |