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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence
[TCGCTAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAGACGGCATTTGATGAGGCCATCGCTGAACTTGACACCTTGAACGAGGATTCCTACAAAGACAGCACCCTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCAGAAAACCAGGCAGATGAGGGGGAGACC]
[+] EMBL CA588222 [TCGCTAGACGGAGGACGGAGGCTGAATCGTCCAGAGAAAAAAAACTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAGACGGCATTTGATGAGGCCATCGCTGAACTTGACACCTTGAACGAGGATTCCTACAAAGACAGCACCCTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCAGAAAACCAGGCAGATGAGGGGGAGACC]
[+] EMBL CA590559 [ CGTCCAGAGAGAAAAAAGTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATG ]
[+] EMBL BU808132 [ ttaaaAGTCACCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAATACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAGACGGCATTTGATGAa ]
consensusID : consensus_2634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 648 fasta sequence
[CGCTCAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACC-TGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGC]
[+] EMBL CA590929 [CGCTCAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCACCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTACTACCTGAAAATGAAAGGCGATTATTTCAGATACC TGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAAC ]
[+] EMBL BU807832 [ CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGTCTTTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACC TGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGC]
[+] EMBL CA590026 [ CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACC ]
[+] EMBL FR0058358 [ GATTAAAAGTCACCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAATAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGG GGTCTACCTGAAAATGAAAGGGGAATATTTCAGATACCTTGTCT ]
[+] EMBL FR0059510 [ ATATTTGGGAGAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGAACAGCTATCTCATCACCAACGCCACCGCTCCTGAGAGCAAGGTGTTCTACCTGAAAATG ]
consensusID : consensus_2634#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCT]
[+] EMBL BU807966 [CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAAAGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCCGAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGTGGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGTGCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGACAAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATCTGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCAGATACCTGTCTGAGGTTGCATCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTCGACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAACTTCTCGGTCTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2634#1 CGCTCAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAA 60
consensus_2634#2 ----CAGCGAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAGGCAAGATTAAA 56
consensus_2634#0 ----TCGCTAGACGGAGGACGGAGGCTGAATCGTCCAGAGAGAAAAAAG----------- 45
** ****************************************
consensus_2634#1 AGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCC 120
consensus_2634#2 AGTCGCCAATATTTGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCC 116
consensus_2634#0 -------------TGTGAAAAATGGATAAGAGCGACCTGGTACAGAAGGCTAAGCTCGCC 92
***********************************************
consensus_2634#1 GAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGT 180
consensus_2634#2 GAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGT 176
consensus_2634#0 GAGCAGGCTGAGCGCTACGACGACATGGCCGCGGCCATGAAGTCGGTGACGGAGCAAGGT 152
************************************************************
consensus_2634#1 GGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGT 240
consensus_2634#2 GGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGT 236
consensus_2634#0 GGGGAGCTGTCAAACGAGGAGCGCAACCTTCTGTCCGTTGCCTACAAGAATGTGGTCGGT 212
************************************************************
consensus_2634#1 GCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGAC 300
consensus_2634#2 GCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGAC 296
consensus_2634#0 GCGCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACCGACGGCAACGAC 272
************************************************************
consensus_2634#1 AAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATC 360
consensus_2634#2 AAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATC 356
consensus_2634#0 AAAAAGCAGCAAATGGCCCGCGAATACCGGGAGAAGATCGAATCTGAGCTGCAGGAGATC 332
************************************************************
consensus_2634#1 TGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAG 420
consensus_2634#2 TGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCA----------------------- 393
consensus_2634#0 TGCCACGATGTGCTGGCGCTACTGGACAGCTATCTCATCACCAACGCCACCGCTCCTGAG 392
*************************************
consensus_2634#1 AGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCA 480
consensus_2634#2 ----------------------------------------GATACCTGTCTGAGGTTGCA 413
consensus_2634#0 AGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTTCAGATACCTGTCTGAGGTTGCA 452
********************
consensus_2634#1 TCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTC 540
consensus_2634#2 TCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTC 473
consensus_2634#0 TCCGGGGATGCCAAGAAGGAGACAACGGACAACTCCCAGCAGGCGTACCAACAAGCTTTC 512
************************************************************
consensus_2634#1 GACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAAC 600
consensus_2634#2 GACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAAC 533
consensus_2634#0 GACATCAGCAAAGGGGATATGCAGCCGACGCACCCCATCCGTCTTGGTCTGGCCCTCAAC 572
************************************************************
consensus_2634#1 TTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGC------------ 648
consensus_2634#2 TTCTCGGTCTTCT----------------------------------------------- 546
consensus_2634#0 TTCTCGGTCTTCTACTATGAAATCCTCAACAATCCGGACAAGGCCTGCAGCCTGGCTAAG 632
*************
consensus_2634#1 ------------------------------------------------------------
consensus_2634#2 ------------------------------------------------------------
consensus_2634#0 ACGGCATTTGATGAGGCCATCGCTGAACTTGACACCTTGAACGAGGATTCCTACAAAGAC 692
consensus_2634#1 ------------------------------------------------------------
consensus_2634#2 ------------------------------------------------------------
consensus_2634#0 AGCACCCTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCAGAAAACCAG 752
consensus_2634#1 ------------------
consensus_2634#2 ------------------
consensus_2634#0 GCAGATGAGGGGGAGACC 770
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |