These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 627 fasta sequence [CCCGTTAAAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGTGGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCTGCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTCAGGTGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAGGAGGTACGTCTTGTAATGACGGATCCACATCAAGCGTTCGAAACAAAGACCCACAGATGCTACAGCATATGTTCCATTGACACCGATGA] [+] EMBL CA590433 [CCCGTTAAAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCGAGCATCACCCTCCAAGAGAGACAATCTACATACTGACGTGCACACGTGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACGTTAGACGGAGGACGAAGACGGTGGAGCACAGGCAGGACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGACAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCAAATCCCCAAGTGGCGTTACCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGCCTGTTGCCTTCATGGTGACTGAGGTGTCAGGTGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAGGAGGTACGTCTTGTAATGACGGATCCACA ] [+] EMBL CA590612 [ GGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGTGGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCTGCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTCAGGTGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAAGAGGTACGTCTTGTAATGACGGATCCACATCAAGCGTTCGAAACAAAGACCCACAGATGCTACAGCATATGTTCCATTGACACCGATGA] [+] EMBL CA590519 [ GAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGTGGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCTGCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTC ] consensusID : consensus_2639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 573 fasta sequence [TTGAGCTGAAACCACCGTCAGATCTGCCGCCTCATTCTTCGACCCTTCCACCGAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG-T------GACAGCGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGTGGAGCTGAGGAAGCACA------CAGTAACCCAGCATGCCTGTTTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGCGCTGCCCA-GACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGTCCAAACCGGTCCACTCAACTGTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGCGTCAGGTGACCAGCGGAGGCCGATGGTAGATCCAGAACCGCAACGCGGTGATAAGGATGACACTGATGACCTCGAGAAAGCGCCGAACCAGTGTGCAATAGATGAGCCTGGTCCATCCA] [+] EMBL CA332983 [TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGACCCTTCCACCAAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG TGACAGCGACAGCGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCATTAGACGGACCACGAAGACGGTGGAGCTGATGAAGCACACTTCCGCAGTAACCCAGCATGCATGTTTGGATAAGGAGGTTAAAGTAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGCGCTGCCCA GACTGAGCACAAGCGGAGAGGAAAACAATCTAGATGGGTCAAAGCCGTCCAAACCGGTCCACTCAACTGTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGC ] [+] EMBL CA590709 [ AGCTGAAACCACCGTCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCGAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG T GACAGTGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGTGGAGCTGAGGAAGCACA CAGTAACCCAGCATGCCTGTTTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGCGCTGCCCA GACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGTCCAAACCAGTCCACTCAACTCTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGCGTCAGGTGACCAGCGGAGGCCGATGGTAGATCCAGAACCGCAACGCGGTGATAAGGATGACACTGATGACCTCGAGAAAGCGCCGAACCAGTGTGCAATAGATGAGCCTGGTCCATCCA] [+] EMBL FR0060682 [ GCATCATCCTCTAAGATAGACAATCTACTTACGGACGTGTTTTCGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG T GACAGCGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGNANCACGAAAACGGTGGAGCTGAGGAAGCACA CAGTAACCCAGCATGCCTGTGTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGGGTGGCGCTGCCCA GACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGGCCCA ] [+] EMBL FR0060749 [ TAAGAGGTACAATCTACTTACTGACCCCCACCCCCGTTAAAGGAACAAAGGCTGCAGAAGATGGTGTGTTCCTGTAGCACTTCTTCTGACGAGAGGAG T GACAGCGACAGGGACAGCAGGCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGCGGAGCTGAGGAAGCACA CAGGAACCCAGCATGCCTGTTTGGATAAGGAGGCTAAAGGAGACGGCAGTCGac ] [+] EMBL FR0060648 [ AGACAGTCTACTTACTGACGGGCACACGCGATAAAGGTACAAAGGCTGCAGAAGATGGGGAGTTCCTGTAGCACTTCTTCTGACGAGTGGAGAC GACAGCCACAGTAACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGTGGAGCTGAGGAAGCACA CAGTAACCTAGCATGCGTGGTTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGGGCTGCCCATGACTGAGCACAAGGCGg ] consensusID : consensus_2639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [AAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAGCGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACTCCTCCGCAGTAACCCAGCATGCATGCTTGGATGAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAACCCCTGGAATCACATCCCCGTGTGGCGCTGCCCAGACTGAGCACAGACGGAGAGGAAAACACTCTCGATGGGTCAAAGCCGTCCAAACCGGTCCAGTGTGCAACAGATGAGCCTGGTCCATCCACGGTTCTGAAAAACAGTTTATTACCACCTCCTCCTGAACCAG] [+] EMBL CA333062 [AAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAGCGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACTCCTCCGCAGTAACCCAGCATGCATGCTTGGATGAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAACCCCTGGAATCACATCCCCGTGTGGCGCTGCCCAGACTGAGCACAGACGGAGAGGAAAACACTCTCGATGGGTCAAAGCCGTCCAAACCGGTCCAGTGTGCAACAGATGAGCCTGGTCCATCCACGGTTCTGAAAAACAGTTTATTACCACCTCCTCCTGAACCAG] consensusID : consensus_2639#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGTGACAGCGACAGCAGTCTGTCAGACTTCCCGACCTACGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGAGGAGGTTAAAGGAGACAGCAGAAGCAGATGTGATGAGGAACCCCTGAGCACAGGTGGAGAGGAAAACACTCTCGATGGGTCAAACAGCTTCTGCAACATCCGCCCCATTGATGCTGATGACCTTGAGCAGGAGCAGAACCAGTGTGACACAGATGAGCCTGGTCC] [+] EMBL CA590456 [TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGTGACAGCGACAGCAGTCTGTCAGACTTCCCGACCTACGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGAGGAGGTTAAAGGAGACAGCAGAAGCAGATGTGATGAGGAACCCCTGAGCACAGGTGGAGAGGAAAACACTCTCGATGGGTCAAACAGCTTCTGCAACATCCGCCCCATTGATGCTGATGACCTTGAGCAGGAGCAGAACCAGTGTGACACAGATGAGCCTGGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2639#0 CCCGTTAAAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCC 60 consensus_2639#1 -----------TTGAGCTGAAACCACCGTCAGATCTGCCGCCTCATTCTTCGACCCTTCC 49 consensus_2639#2 -------AAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCC 53 consensus_2639#3 -----------TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCC 49 **************** ************************* *** ** consensus_2639#0 ACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGT 120 consensus_2639#1 ACCGAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGT 109 consensus_2639#2 ACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGT 113 consensus_2639#3 ACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGT 109 *** ************ **** ********* * ************************** consensus_2639#0 CCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAG 180 consensus_2639#1 ACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAG 169 consensus_2639#2 CCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAG 173 consensus_2639#3 CCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGTGACAG 169 ******************** *********** ******************** ***** consensus_2639#0 CGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGT 240 consensus_2639#1 CGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGT 229 consensus_2639#2 CGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCGTTAGACGGAGCACGAAGACGGT 233 consensus_2639#3 CGACAG------CAGTCTGTCAGACTTCCCGACCTACGTTAGACGGAGCACGAAGACGGT 223 ****** ************ **** *** * ** ********* * ***** consensus_2639#0 GGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAA 300 consensus_2639#1 GGAGCTGAGGAAGCACA------CAGTAACCCAGCATGCCTGTTTGGATAAGGAGGTTAA 283 consensus_2639#2 GGAGCTGAGGCAGCACTCCTCCGCAGTAACCCAGCATGCATGCTTGGATGAGGAGGTTAA 293 consensus_2639#3 GGAGCTGAGGCAGCACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGAGGAGGTTAA 283 ***** *** * *** *** **** ******* ** ****** *** **** consensus_2639#0 AGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCT 360 consensus_2639#1 AGGAGACGGCAGTGGCACATGTGA---GGAAACTCTTGAATCACATCCCCGTGTGGCGCT 340 consensus_2639#2 AGGAGACGGCAGTGGCACATGTGA---GGAACCCCTGGAATCACATCCCCGTGTGGCGCT 350 consensus_2639#3 AGGAGACAGCAGAAGCAGATGTGATGAGGAACCCCT------------------------ 319 ****** ** * *** ****** **** * ** consensus_2639#0 GCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACT 420 consensus_2639#1 GCCCAGACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGTCCAAACC 400 consensus_2639#2 GCCCAGACTGAGCACAGACGGAGAGGAAAACACTCTCGATGGGTCAAAGCCGTCCAAACC 410 consensus_2639#3 ---------GAGCACAGGTGGAGAGGAAAACACTCTCGATGGGTCAAACAGCTTCTGCAA 370 ******* ******* ***** * **** ****** * * consensus_2639#0 GGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTCAGG 480 consensus_2639#1 GGTCCACTCAACTGTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGCGTCAGG 460 consensus_2639#2 GGTCCAGTGTGCAACAGATGAGCC-TGGTCCATC-----CACGGTT-CTGAAA-AACAGT 462 consensus_2639#3 CATCCGCCCCATTGATGCTGA--TGACCTTGAGCAGGAGCAGAACCAGTGTGACA-CAGA 427 ** * * * ** ** *** consensus_2639#0 TGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAGGA 540 consensus_2639#1 TGACCAGCGGAGGCCGATGGTAGATCCAGAACCGCAACGCGGTGATAAGGATGACACTGA 520 consensus_2639#2 TTATTACCA----CCTCCTCCTGAACCAG------------------------------- 487 consensus_2639#3 TGAGCCTGGT---CC--------------------------------------------- 439 * * ** consensus_2639#0 GGTACGTCTTGTAATGACGGATCCACATCAAGCGTTCGAAACAAAGACCCACAGATGCTA 600 consensus_2639#1 TGACCTCGAGAAAGCGCCGAACCAGTGTGCAATAGATGAGCCTGGTCCATCCA------- 573 consensus_2639#2 ------------------------------------------------------------ consensus_2639#3 ------------------------------------------------------------ consensus_2639#0 CAGCATATGTTCCATTGACACCGATGA 627 consensus_2639#1 --------------------------- consensus_2639#2 --------------------------- consensus_2639#3 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |