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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 627 fasta sequence
[CCCGTTAAAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGTGGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCTGCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTCAGGTGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAGGAGGTACGTCTTGTAATGACGGATCCACATCAAGCGTTCGAAACAAAGACCCACAGATGCTACAGCATATGTTCCATTGACACCGATGA]
[+] EMBL CA590433 [CCCGTTAAAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCGAGCATCACCCTCCAAGAGAGACAATCTACATACTGACGTGCACACGTGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACGTTAGACGGAGGACGAAGACGGTGGAGCACAGGCAGGACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGACAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCAAATCCCCAAGTGGCGTTACCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGCCTGTTGCCTTCATGGTGACTGAGGTGTCAGGTGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAGGAGGTACGTCTTGTAATGACGGATCCACA ]
[+] EMBL CA590612 [ GGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGTGGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCTGCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTCAGGTGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAAGAGGTACGTCTTGTAATGACGGATCCACATCAAGCGTTCGAAACAAAGACCCACAGATGCTACAGCATATGTTCCATTGACACCGATGA]
[+] EMBL CA590519 [ GAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAGCGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGTGGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAAAGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCTGCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACTGGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTC ]
consensusID : consensus_2639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 573 fasta sequence
[TTGAGCTGAAACCACCGTCAGATCTGCCGCCTCATTCTTCGACCCTTCCACCGAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG-T------GACAGCGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGTGGAGCTGAGGAAGCACA------CAGTAACCCAGCATGCCTGTTTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGCGCTGCCCA-GACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGTCCAAACCGGTCCACTCAACTGTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGCGTCAGGTGACCAGCGGAGGCCGATGGTAGATCCAGAACCGCAACGCGGTGATAAGGATGACACTGATGACCTCGAGAAAGCGCCGAACCAGTGTGCAATAGATGAGCCTGGTCCATCCA]
[+] EMBL CA332983 [TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGACCCTTCCACCAAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG TGACAGCGACAGCGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCATTAGACGGACCACGAAGACGGTGGAGCTGATGAAGCACACTTCCGCAGTAACCCAGCATGCATGTTTGGATAAGGAGGTTAAAGTAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGCGCTGCCCA GACTGAGCACAAGCGGAGAGGAAAACAATCTAGATGGGTCAAAGCCGTCCAAACCGGTCCACTCAACTGTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGC ]
[+] EMBL CA590709 [ AGCTGAAACCACCGTCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCGAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG T GACAGTGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGTGGAGCTGAGGAAGCACA CAGTAACCCAGCATGCCTGTTTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGCGCTGCCCA GACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGTCCAAACCAGTCCACTCAACTCTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGCGTCAGGTGACCAGCGGAGGCCGATGGTAGATCCAGAACCGCAACGCGGTGATAAGGATGACACTGATGACCTCGAGAAAGCGCCGAACCAGTGTGCAATAGATGAGCCTGGTCCATCCA]
[+] EMBL FR0060682 [ GCATCATCCTCTAAGATAGACAATCTACTTACGGACGTGTTTTCGCGTTAAAGGTACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAG T GACAGCGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGNANCACGAAAACGGTGGAGCTGAGGAAGCACA CAGTAACCCAGCATGCCTGTGTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGGGTGGCGCTGCCCA GACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGGCCCA ]
[+] EMBL FR0060749 [ TAAGAGGTACAATCTACTTACTGACCCCCACCCCCGTTAAAGGAACAAAGGCTGCAGAAGATGGTGTGTTCCTGTAGCACTTCTTCTGACGAGAGGAG T GACAGCGACAGGGACAGCAGGCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGCGGAGCTGAGGAAGCACA CAGGAACCCAGCATGCCTGTTTGGATAAGGAGGCTAAAGGAGACGGCAGTCGac ]
[+] EMBL FR0060648 [ AGACAGTCTACTTACTGACGGGCACACGCGATAAAGGTACAAAGGCTGCAGAAGATGGGGAGTTCCTGTAGCACTTCTTCTGACGAGTGGAGAC GACAGCCACAGTAACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGTGGAGCTGAGGAAGCACA CAGTAACCTAGCATGCGTGGTTGGATAAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAAACTCTTGAATCACATCCCCGTGTGGGGCTGCCCATGACTGAGCACAAGGCGg ]
consensusID : consensus_2639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[AAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAGCGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACTCCTCCGCAGTAACCCAGCATGCATGCTTGGATGAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAACCCCTGGAATCACATCCCCGTGTGGCGCTGCCCAGACTGAGCACAGACGGAGAGGAAAACACTCTCGATGGGTCAAAGCCGTCCAAACCGGTCCAGTGTGCAACAGATGAGCCTGGTCCATCCACGGTTCTGAAAAACAGTTTATTACCACCTCCTCCTGAACCAG]
[+] EMBL CA333062 [AAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAGCGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACTCCTCCGCAGTAACCCAGCATGCATGCTTGGATGAGGAGGTTAAAGGAGACGGCAGTGGCACATGTGAGGAACCCCTGGAATCACATCCCCGTGTGGCGCTGCCCAGACTGAGCACAGACGGAGAGGAAAACACTCTCGATGGGTCAAAGCCGTCCAAACCGGTCCAGTGTGCAACAGATGAGCCTGGTCCATCCACGGTTCTGAAAAACAGTTTATTACCACCTCCTCCTGAACCAG]
consensusID : consensus_2639#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGTGACAGCGACAGCAGTCTGTCAGACTTCCCGACCTACGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGAGGAGGTTAAAGGAGACAGCAGAAGCAGATGTGATGAGGAACCCCTGAGCACAGGTGGAGAGGAAAACACTCTCGATGGGTCAAACAGCTTCTGCAACATCCGCCCCATTGATGCTGATGACCTTGAGCAGGAGCAGAACCAGTGTGACACAGATGAGCCTGGTCC]
[+] EMBL CA590456 [TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCCACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGTCCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGTGACAGCGACAGCAGTCTGTCAGACTTCCCGACCTACGTTAGACGGAGCACGAAGACGGTGGAGCTGAGGCAGCACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGAGGAGGTTAAAGGAGACAGCAGAAGCAGATGTGATGAGGAACCCCTGAGCACAGGTGGAGAGGAAAACACTCTCGATGGGTCAAACAGCTTCTGCAACATCCGCCCCATTGATGCTGATGACCTTGAGCAGGAGCAGAACCAGTGTGACACAGATGAGCCTGGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2639#0 CCCGTTAAAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCC 60
consensus_2639#1 -----------TTGAGCTGAAACCACCGTCAGATCTGCCGCCTCATTCTTCGACCCTTCC 49
consensus_2639#2 -------AAGGTTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTTCC 53
consensus_2639#3 -----------TTGAGCTGAAACCACCATCAGATCTGCCGCCTCATTCTTCGATCCTCCC 49
**************** ************************* *** **
consensus_2639#0 ACCGAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGT 120
consensus_2639#1 ACCGAGCATCACCCTCTAAGATAGACAATCTACTTACTGACGTGCACACGCGTTAAAGGT 109
consensus_2639#2 ACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGT 113
consensus_2639#3 ACCAAGCATCACCCTCCAAGAGAGACAATCTCCATACTGACGTGCACACGCGTTAAAGGT 109
*** ************ **** ********* * **************************
consensus_2639#0 CCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGCGACAG 180
consensus_2639#1 ACAAAGGCTGCAGAAGATGGGGTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAG 169
consensus_2639#2 CCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGCACTTCTTCTGACGAGTGGAGTGACAG 173
consensus_2639#3 CCAAAGGCTGCAGAAGATGGGCTGTTCCTGTAGTACTTCTTCTGACGAGTGGAGTGACAG 169
******************** *********** ******************** *****
consensus_2639#0 CGACAGCGACAGCAGTCTGTCAGACTTCCCAACCTACATTAGACGGAGCAAGGTGACGGT 240
consensus_2639#1 CGACAGTGACAGCAGTCTGTCAGAACTCCCACCCTACATTCGACGGAGCACGAAAACGGT 229
consensus_2639#2 CGACAGCGACAGCAGTCTGTCAGAACTCCCACCCTTCGTTAGACGGAGCACGAAGACGGT 233
consensus_2639#3 CGACAG------CAGTCTGTCAGACTTCCCGACCTACGTTAGACGGAGCACGAAGACGGT 223
****** ************ **** *** * ** ********* * *****
consensus_2639#0 GGAGCACAGGCAACACACCACCGCAGGAACCAAGCATGCATGTTTGGATGCAGAGCTTAA 300
consensus_2639#1 GGAGCTGAGGAAGCACA------CAGTAACCCAGCATGCCTGTTTGGATAAGGAGGTTAA 283
consensus_2639#2 GGAGCTGAGGCAGCACTCCTCCGCAGTAACCCAGCATGCATGCTTGGATGAGGAGGTTAA 293
consensus_2639#3 GGAGCTGAGGCAGCACACCTCCGCAGGAACCCAGCATGCATGTTTGGATGAGGAGGTTAA 283
***** *** * *** *** **** ******* ** ****** *** ****
consensus_2639#0 AGGAGAAAGCCGAGGCAGATGTGATGAGGAAACCCTTGAATCACATCCCCATGTGGCGCT 360
consensus_2639#1 AGGAGACGGCAGTGGCACATGTGA---GGAAACTCTTGAATCACATCCCCGTGTGGCGCT 340
consensus_2639#2 AGGAGACGGCAGTGGCACATGTGA---GGAACCCCTGGAATCACATCCCCGTGTGGCGCT 350
consensus_2639#3 AGGAGACAGCAGAAGCAGATGTGATGAGGAACCCCT------------------------ 319
****** ** * *** ****** **** * **
consensus_2639#0 GCCCAGACTGAGCACAGGCGGAGAGGAAAACACTCCAGATGTGTCAAAGCCGTCCAAACT 420
consensus_2639#1 GCCCAGACTGAGCACAAGCGGAGAGGCAAACAATATAGATGGGTCAAAGCCGTCCAAACC 400
consensus_2639#2 GCCCAGACTGAGCACAGACGGAGAGGAAAACACTCTCGATGGGTCAAAGCCGTCCAAACC 410
consensus_2639#3 ---------GAGCACAGGTGGAGAGGAAAACACTCTCGATGGGTCAAACAGCTTCTGCAA 370
******* ******* ***** * **** ****** * *
consensus_2639#0 GGTCTGGTCAACACCCGTTAGGCCACCGTCTGTTGCCTTCATGGTGACTGAGGTGTCAGG 480
consensus_2639#1 GGTCCACTCAACTGTTGTTGGGCCACCGTCCATTGCTATCATGATGACTGAGGCGTCAGG 460
consensus_2639#2 GGTCCAGTGTGCAACAGATGAGCC-TGGTCCATC-----CACGGTT-CTGAAA-AACAGT 462
consensus_2639#3 CATCCGCCCCATTGATGCTGA--TGACCTTGAGCAGGAGCAGAACCAGTGTGACA-CAGA 427
** * * * ** ** ***
consensus_2639#0 TGACCAGCAGAGGCCGACGGTAGATTCAGAACCGCAACATGACGATAAGGACGGCGAGGA 540
consensus_2639#1 TGACCAGCGGAGGCCGATGGTAGATCCAGAACCGCAACGCGGTGATAAGGATGACACTGA 520
consensus_2639#2 TTATTACCA----CCTCCTCCTGAACCAG------------------------------- 487
consensus_2639#3 TGAGCCTGGT---CC--------------------------------------------- 439
* * **
consensus_2639#0 GGTACGTCTTGTAATGACGGATCCACATCAAGCGTTCGAAACAAAGACCCACAGATGCTA 600
consensus_2639#1 TGACCTCGAGAAAGCGCCGAACCAGTGTGCAATAGATGAGCCTGGTCCATCCA------- 573
consensus_2639#2 ------------------------------------------------------------
consensus_2639#3 ------------------------------------------------------------
consensus_2639#0 CAGCATATGTTCCATTGACACCGATGA 627
consensus_2639#1 ---------------------------
consensus_2639#2 ---------------------------
consensus_2639#3 ---------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |