These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 603 fasta sequence [GACTCCAGGAGCTCTTCTCCTTTATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGTGTTCAGGACATCAACAACGCCGTGCCAAAGACCAACCAAGGAA] [+] EMBL BU806669 [GACTCCAGCTTCTCTTCTCCTTTATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTAAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGG ] [+] EMBL FR0055134 [ GAGCTCTTCTCCTTTATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAG ] [+] EMBL BU805170 [ TATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGTGTTCAGGACATCAACAACGCCGTGCCAAAGACCAACCAAGGAA] [+] EMBL FR0055719 [ TCCAGCTCCAACGCTCCAGAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGACGCGATTGGGCTCTTTGACAGAGTTGGCGACAGTCAGGTGGTCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAGCCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGGACCTGAGATTTAGGCCCTCATGACCGGCCATGGGGACGAGAACGGGAGCGTGCACTATGAGGCTTTCGTCAAGCACATCAGGTCTGTGTAAG ] [+] EMBL BU806841 [ ACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAAGTGGCCTTTCACCCAGTAGCCGACATCATGCGCGCTCTGGGCCAa ] [+] EMBL FR0055555 [ TCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGCACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACATTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGTAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGGAGGAGGAGTGCTGACGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGAGTTCAGGACATCAAC ] [+] EMBL FR0055532 [ AACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGTGTTCAGGACATCAAC ] consensusID : consensus_2652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [AGTGCTGCACTCCTTGTGTTGTCTCCGGAATTGCCTGTACATCAGGGACAAAGTACTTCAGCAGTTAATCTGAAATGGCACCCAAGAAGGACCCAAAGGCTCCTGTCAAGAAGGAGGCTCCTGCCAAGAAGGCCGAAGCTGCGCCTGCACCTGCTCCAGCGCCCGAGCCCGCCCCTGCCCCGAAGCCTGCCGCAGTCGACCTGTCCGCCGTCAAGATCGAGTTCTCCCCAGATCAGATTGAAGACTACTGGGAGGCTTTCGGACTCTTCGACAGAGTGGGAGACAACAAGGTGGCTTACAACCAGATCGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGAGGTGACCAAAATGCTGGGAAACCCCAACACTGAGGACATGGCCAACAAAAGAGTCGAGTTTGAGGGCTTTCTGCCCATGCTCCAGACCATCATCAACAGCCCAAACAAGGCTGGCTTTGAAGACTACGTTGAGGGTCTGCGTGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTGAGCTGCGCATTGTGCTGTCAACACTGGGAGAGAAGATGAATGAGGCTGAGATCGACGCT] [+] EMBL CA589080 [AGTGCTGCACTCCTTGTGTTGTCTCCGGAATTGCCTGTACATCAGGGACAAAGTACTTCAGCAGTTAATCTGAAATGGCACCCAAGAAGGACCCAAAGGCTCCTGTCAAGAAGGAGGCTCCTGCCAAGAAGGCCGAAGCTGCGCCTGCACCTGCTCCAGCGCCCGAGCCCGCCCCTGCCCCGAAGCCTGCCGCAGTCGACCTGTCCGCCGTCAAGATCGAGTTCTCCCCAGATCAGATTGAAGACTACTGGGAGGCTTTCGGACTCTTCGACAGAGTGGGAGACAACAAGGTGGCTTACAACCAGATCGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGAGGTGACCAAAATGCTGGGAAACCCCAACACTGAGGACATGGCCAACAAAAGAGTCGAGTTTGAGGGCTTTCTGCCCATGCTCCAGACCATCATCAACAGCCCAAACAAGGCTGGCTTTGAAGACTACGTTGAGGGTCTGCGTGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTGAGCTGCGCATTGTGCTGTCAACACTGGGAGAGAAGATGAATGAGGCTGAGATCGACGCT] consensusID : consensus_2652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 504 fasta sequence [TCTACAGGCAGCCCGACGGTGTTCAGAACATCAACAACGCCGTGCCAAAGACCAACCAAGGAAAGACAAGGACTATGAACAAGGGATATTGAAGCGAACCCATCTTGTTGCATTTTGTTTTCCTTTCATTTCAAACCCTCCTCTGTCTCGGAACATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGCCTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAGAAGGGGTGACCGCTCATCAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCAGTCACGCCATCACTGACCCAGCAGTGCCAAAGGTGCTGGAGAAAGGTCGTGGTCAGACCGCCACACATCTCCCCACTTCCCTCAGAAGATTTAGTTATTGTCATTCTGTTCATTTCAGGATAAACTTTTCCAACTTACATCCCAAAAGAAAAACAGAAAAACCTCAGGGGGGGCCCGGGAACCAAGTTTT] [+] EMBL FR0055379 [TCTACAGGCAGCCCGACGGTGTTCAGAACATCAACAACGCCGTGCCAAAGACCAACCAAGGAAAGACAAGGACTATGAACAAGGGATATTGAAGCGAACCCATCTTGTTGCATTTTGTTTTCCTTTCATTTCAAACCCTCCTCTGTCTCGGAACATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGCCTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAGAAGGGGTGACCGCTCATCAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCAGTCACGCCATCACTGACCCAGCAGTGCCAAAGGTGCTGGAGAAAGGTCATGGTCAGACCGCCACACATCTCCCCACTTCCCTCAGAAGATTTAGTTATTGTCATTCTGTTCATTTCAGGATAAACTT ] [+] EMBL FR0055166 [ TTCAAACCCTCCTCTGTCTCGGAACATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGCCTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAGAAGGGGTGACCGCTCATCAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCAGTCACGCCATCACTGACCCAGCAATGCCAAAGGTGCTGGAGAAAGGTCGTGGTCAGACCGCCACACATCTCCCCACTTCCCTCAGAAGATTTATTTATTGTCATTCTGTTCATTTCAGAATAAACTTTTCCAACTTACATCCCAAAAGAAAAACAGAAAAACCTCAGGGGGGGCCCGGGAACCAAGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2652#0 ------------------------------------------------------------ consensus_2652#1 AGTGCTGCACTCCTTGTGTTGTCTCCGGAATTGCCTGTACATCAGGGACAAAGTACTTCA 60 consensus_2652#2 ------------------------------------------------------------ consensus_2652#0 ------------------------------------------------------------ consensus_2652#1 GCAGTTAATCTGAAATGGCACCCAAGAAGGACCCAAAGGCTCCTGTCAAGAAGGAGGCTC 120 consensus_2652#2 ------------------------------------------------------------ consensus_2652#0 --------------------------------------GACTCCAGGAGCTCTTCTCCTT 22 consensus_2652#1 CTGCCAAGAAGGCCGAAGCTGCGCCTGCACCTGCTCCAGCGCCCGAGCCCGCCCCTGCCC 180 consensus_2652#2 -----------------------------------------TCTACAGGCAGCCCGACGG 19 * * * * consensus_2652#0 TATTTCCTCCAGCT-----CCAACGCTCCAAAATGACCGAGTACACGCCAG-ACCA-GAT 75 consensus_2652#1 CGAAGCCTGCCGCAGTCGACCTGTCCGCCGTCAAGATCGAGTTCTCCCCAG-ATCA-GAT 238 consensus_2652#2 TGTTCAGAACATCAACAACGCCGTGCCAAAGACCAACCAAGGAAAGACAAGGACTATGAA 79 * * * * * * ** * ** * * ** consensus_2652#0 TGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGG--TGACAGT-CAGGTGGC 132 consensus_2652#1 TGAAGACTACTGGGAGGCTTTCGGACTCTTCGACAGAGTGGG--AGACAAC-AAGGTGGC 295 consensus_2652#2 CAAGGGATATTGAAGCGAACCCATCTTGTTGCATTTTGTTTTCCTTTCATTTCAAACCCT 139 * * * * * ** * ** ** * consensus_2652#0 CTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGT 192 consensus_2652#1 TTACAACCAGATCGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGAGGT 355 consensus_2652#2 CCTCTGTCTCGGAAC-ATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGC 198 * * * * *** * *** * *** ******* * * * consensus_2652#0 TGCAAAGATTCTGGGCA-ACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTG 251 consensus_2652#1 GACCAAAATGCTGGGAA-ACCCCAACACTGAGGACATGGCCAACAAAAGAGTCGAGTTTG 414 consensus_2652#2 CTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAG---A 255 * * ** ** * ** ***** * * * consensus_2652#0 ACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCC---CAAGGGCACCGTCGACG 308 consensus_2652#1 AGGGCTTTCTGCCCATGCTCCAGACCATCATCAACAGCCCAAACAAGGCTGGCTTTGAAG 474 consensus_2652#2 AGGGGTGACCGCTCAT-CAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCA 314 * * * * ** *** * * * * * ** * * consensus_2652#0 ACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTG 368 consensus_2652#1 ACTACGTTGAGGGTCTGCGTGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTG 534 consensus_2652#2 GTCACGCCATCACTGACC-CAGCAGTGCCAAAG-GTGCTGGAGAAAGGTCGTGGTCAGAC 372 *** * * * * *** * * ** * * ** *** * consensus_2652#0 AGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTG--AGCCTG---AGATTGA 423 consensus_2652#1 AGCTGCGCATTGTGCTGTCAACACTGGGAGAGAAGATGAATG--AGGCTG---AGATCGA 589 consensus_2652#2 CGCCACACATCTCCCCACTTCCCTCAGAAGATTTAGTTATTGTCATTCTGTTCATTTCAG 432 ** * *** * * * *** * ** * *** * * consensus_2652#0 GGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAA 483 consensus_2652#1 CGCT-------------------------------------------------------- 593 consensus_2652#2 GATAAACTTTTCCAACTTACATCCCAAAAGAAAAACAGAAAAACCTCAGGGGGGGCCCGG 492 consensus_2652#0 GCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCT 543 consensus_2652#1 ------------------------------------------------------------ consensus_2652#2 GAACCAAGTTTT------------------------------------------------ 504 consensus_2652#0 ACAGGCAGCCCGACGGTGTTCAGGACATCAACAACGCCGTGCCAAAGACCAACCAAGGAA 603 consensus_2652#1 ------------------------------------------------------------ consensus_2652#2 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |