These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1328 fasta sequence [CAACATTTATGACCTATGCTGAACAGAATGAATGGCCTGAGATGAGTGAGGGTACGGTTGGATAACCAACATTAGAAGAGCCGCACGCTGTTCCGCTTGATAATTCTCCCACACTGTGGCCACTGTTTGCATCACAGGCAGATATTTAGATTTAATCCAACATTCACCGTGTGTCTTGAGGGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGCCCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGAAACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCAAGGTGATCTGTGTCTGTGTGTCTGTAACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGGTGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAGGATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAATTTGGGGGGAAAAAAACAACATTCTGATATGTGAAGCTTTTACAGTTTATAGAAAAATGATTAGTCACACTTTAAACAAGAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGGATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGGGGTGGGTCCAAAGTCTCACCTTGAACCATTGTTGTGACACTTATCGTGCTTGAGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTCTTTTTTTTCTTAAAATCACCGTTTTATAGCCTCCCATTATAACCCATCACACCGTCAGCAGTTTTACTCTCCTCATTGGTCTCTTTGGTTGAGCAA] [+] EMBL CA589015 [CAACATTTATGACCTATGCTGAACAGAATGAATGGCCTGAGATGAGTGAGGGTACGGTTGGATAACCAACATTAGAAGAGCCGCACGCTGTTCCGCTTGATAATTCTCCCACACTGTGGCCACTGTTTGCATCACAGGCAGATATTTAGATTTAATCCAACATTCACCGTGTGTCTTGAGGGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGCCCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGAAACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCAAGGTGATCTGTGTCTGTGTGTCTGTAACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGGTGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAGGATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAAT ] [+] EMBL BU807788 [ TGTCTTGAGGGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGCCCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGAAACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCAAGGTGATCTGTGTCTGTGTGTCTGTTACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGGTGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAGGATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAATTTGGGGGGAAAAAAACAACATTCTGATATGTGAAGCTTTTACAGTTTATAGAAAAATGATTAGTCACACTTTAAACAAGAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGGATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAA ] [+] EMBL FR0061450 [ AAAATGATTAGTCACACTTTAAACAAGAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGGATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGT ] [+] EMBL FR0062034 [ TTCTTGATGGATAAAAAAAAAAGACATTATTTTGGTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTA ] [+] EMBL BU808563 [ TTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCCGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGTGGTTCCAAAGTCTCACCTTGAACCATTGTTGTGACACTTATCGTGCTTGAGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTCTTTTTTTTCTTAAAATCACCGTTTTATAGCCTCCCATTATAACCCATCACACCGTCAGCAGTTTTACTCTCCTCATTGGTCTCTTTGGTTGAGCAA] [+] EMBL FR0061120 [ CTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGGGGTGGGTCCAAAGTCTCACCTTGAACCAT ] consensusID : consensus_2653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 554 fasta sequence [CCCATTAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGGGGGTCCAAAGTCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTTCTT] [+] EMBL CA846224 [CCCATTAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTACACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGACAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGTGGTTCCAAAGTCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTT ] [+] EMBL FR0061638 [ GCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGGATCCTCTTGATTCTAA ] [+] EMBL FR0061665 [ GGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGT GGGGCTCCAAAGTCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTTCTT] [+] EMBL FR0061934 [ CCCGTTCTTCTCACTGTGTTTTGATTAGAAGGGGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGAGTCTAACTGTGGGTGGTCCAAAGCCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGGTCATATTGTTCCAGCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2653#0 CAACATTTATGACCTATGCTGAACAGAATGAATGGCCTGAGATGAGTGAGGGTACGGTTG 60 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 GATAACCAACATTAGAAGAGCCGCACGCTGTTCCGCTTGATAATTCTCCCACACTGTGGC 120 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 CACTGTTTGCATCACAGGCAGATATTTAGATTTAATCCAACATTCACCGTGTGTCTTGAG 180 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 GGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGC 240 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 CCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGA 300 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 AACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCA 360 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 AGGTGATCTGTGTCTGTGTGTCTGTAACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGG 420 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 TGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAG 480 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 GATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAATTTGGGGGGAAAAAAACAA 540 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 CATTCTGATATGTGAAGCTTTTACAGTTTATAGAAAAATGATTAGTCACACTTTAAACAA 600 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 GAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGG 660 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 ATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCA 720 consensus_2653#1 ---CCCATTAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCA 57 * *************************************************** consensus_2653#0 GTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTG 780 consensus_2653#1 GTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTG 117 ************************************************************ consensus_2653#0 AACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGT 840 consensus_2653#1 AACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGT 177 ************************************************************ consensus_2653#0 CGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAA 900 consensus_2653#1 CGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAA 237 ************************************************************ consensus_2653#0 ACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAG 960 consensus_2653#1 ACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAG 297 ************************************************************ consensus_2653#0 TTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGAC 1020 consensus_2653#1 TTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGAC 357 ************************************************************ consensus_2653#0 CACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTAT 1080 consensus_2653#1 CACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTAT 417 ************************************************************ consensus_2653#0 ACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGGGGTGGGTCCAAAGTCT 1140 consensus_2653#1 ACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGGGGGTCCAAAGTCT 477 ******************************************* ** ************* consensus_2653#0 CACCTTGAACCATTGTTGTGACACTTATCGTGCTTGAGTGTAACAGCTGCTCTGTAGGTG 1200 consensus_2653#1 CACCTTGAACCATTGTTGTG------------------TGTAACAGCTGCTCTGTAGGTG 519 ******************** ********************** consensus_2653#0 TTCATATTGCTCCAGCCTGAACTTTTTTTTTCTTTTTTTTCTTAAAATCACCGTTTTATA 1260 consensus_2653#1 TTCATATTGCTCCAGCCTGAACTTTTTTTTTTCTT------------------------- 554 ******************************* ** consensus_2653#0 GCCTCCCATTATAACCCATCACACCGTCAGCAGTTTTACTCTCCTCATTGGTCTCTTTGG 1320 consensus_2653#1 ------------------------------------------------------------ consensus_2653#0 TTGAGCAA 1328 consensus_2653#1 -------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |