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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 851 fasta sequence
[GCTAGCTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG-AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAGAAGAAGGAGGCGGAGGAGCAGAAGAAGCGGCAGGCTGCCTTCAAAGAGAAGCAGTCGGCTTTCAAGTGACCGCCCGTCTCCGGTCGGCCTCGGGCTGCTCCAGCGCCCGTTTCCTTCATGCTTTACTCTCGGACGACCGTCAAACTGCTGCGATTCTGCTCAAACCACATTTATCTAATTCGTGTGCTGGC]
[+] EMBL BU806039 [GCTAGCTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCC ]
[+] EMBL CA589719 [ CTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGACCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGGCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAAGAGCCCAGTCCTTC ]
[+] EMBL BU807595 [ AGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATC ]
[+] EMBL BU805770 [ AGCTGCCTCCTTCCAACATGGCCACAGACGAACTCCCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTCCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGTGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTC ]
[+] EMBL CA332916 [ CCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCTCGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCAGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATC ]
[+] EMBL BU807896 [ CCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAG AGAAGGAGGCGGAGGAGC ]
[+] EMBL CA846215 [ ctttAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGGTAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCAGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAGAAGAAGGAGGCGGAGGAGCAGAAGAAGCGGCAGGCTGCCTTCAAAGAGAAGCAGTCGGCTTTCAAGTGACCGCCCGTCTCCGGTCGGCCTCGGGCTGCTCCAGCGCCCGTTTCCTTCATGCTTTACTCTCGGACGACCGTCAAACTGCTGCGATTCTGCTCAAACCACATTTATCTAATTCGTGTGCTGGC]
consensusID : consensus_2654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 623 fasta sequence
[CTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGAGCGAGGAGGGAACCGCGGAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAA-GGCAGCAGCGGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTAGGTGAAACCTTCAGACATCTGTCGGTCACAGCTGAGACCAGAAGAGCATT]
[+] EMBL CA589027 [CTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGGAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAA GGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTAGGTGAAACCTTCAGACATCTGTCGGTCACAGCTGAGACCAGAAGAGCATT]
[+] EMBL FR0063090 [ GCCACAGACGAACTCTCGTTCAAGCTCAGCCACCGGCTCCAGAGCGAGGAGGGAACCGCGGAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACG ]
[+] EMBL FR0058417 [ TTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGGCAGCACCGGAAGAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2654#0 GCTAGCTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTC 60
consensus_2654#1 ---------------------------CTGCCTCCTTCCAACATGGCCACAGACGAACTC 33
*********************************
consensus_2654#0 TCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGGAGCCCGTAGCCGTG 120
consensus_2654#1 TCGTCCAAGCTCAGCCACCGGCTCCAGAGCGAGGAGGGAACCGCGGAGCCCGTAGCCGTG 93
**************************** *******************************
consensus_2654#0 GACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTG 180
consensus_2654#1 GACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTG 153
************************************************************
consensus_2654#0 TCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCC 240
consensus_2654#1 TCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCC 213
************************************************************
consensus_2654#0 AAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATG 300
consensus_2654#1 AAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATG 273
************************************************************
consensus_2654#0 GAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTG 360
consensus_2654#1 GAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTG 333
************************************************************
consensus_2654#0 AAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATG 420
consensus_2654#1 AAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATG 393
************************************************************
consensus_2654#0 AAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTC 480
consensus_2654#1 AAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTC 453
************************************************************
consensus_2654#0 AGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTC 540
consensus_2654#1 AGGAAGGCAGCAGCGGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTC 513
************** *********************************************
consensus_2654#0 GAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTC 600
consensus_2654#1 GAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGT- 572
***********************************************************
consensus_2654#0 CACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAG 660
consensus_2654#1 ----AGGTGAAACCTTCAGACATCTGTCGGTCACAGCTGAGACCAGAAGAGCATT----- 623
*** * ** * ** * ** * * * ** ** *
consensus_2654#0 AAGAAGGAGGCGGAGGAGCAGAAGAAGCGGCAGGCTGCCTTCAAAGAGAAGCAGTCGGCT 720
consensus_2654#1 ------------------------------------------------------------
consensus_2654#0 TTCAAGTGACCGCCCGTCTCCGGTCGGCCTCGGGCTGCTCCAGCGCCCGTTTCCTTCATG 780
consensus_2654#1 ------------------------------------------------------------
consensus_2654#0 CTTTACTCTCGGACGACCGTCAAACTGCTGCGATTCTGCTCAAACCACATTTATCTAATT 840
consensus_2654#1 ------------------------------------------------------------
consensus_2654#0 CGTGTGCTGGC 851
consensus_2654#1 -----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |