These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 709 fasta sequence [CCAGGAGTTGGGTTTGCAGCAAGACCTATGTCACCCCCCGCCGACCC-TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC-GATTACATCCTGGGTCTGAAGGTTGAAGATTTC-TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGG-TGGTGAATATCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTGAAGATCTCCATATGGGGGTGGGAGCCCAGGTCGCGTCAAGAGAAAGAACGCCAAGAAGGGCCAGGGTGGATCAGGAGGAGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGTTTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAAAAAAAAAAAAAAAAAACCCGAGGGGGGGCCCGGTACCAACTTTTTGTCCCCTTAATG] [+] EMBL FR0062544 [CCAGGAGTTGTNTTTGCAGCATTACCTATGTCACCCCCCGCCGACCC TTGGAGAAATCCCGTCTCGACCAGNAGTTGAACCTCATTGTCCAATATGTGCTGAGGAACAAGCGTGAGGTGTGGAGGCTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGCCTGGTGAGAATCGGCGTGTTGCATGAGGGTAAGATGAACCTC GATTACATCCCTGGTCTGAAGGGTGAAGATTTCTTTGGAGCGGAGGCTGCAGACACc ] [+] EMBL FR0055454 [ AGGAGATGAGTTTGCAGCAAGACCTATGTCACCCCCAGCCGAGTC TTCGAGAAATCACGTCTCGACCAGGAGTTGATGCTCATTGGCGAATATGGCCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGATCACCCTGGACAAAATTCGCAACGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGTCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGG ] [+] EMBL FR0055593 [ AGTTGATTTTGCAGCAAGACCTATGTCACCCCCCGCCGAGCC TTCAAGAAATCCCGTCTCGACCAGGAGTTGATGATCATTGGCGAATATGGCCTGAGGAACAAGCGCGAGGTGTGGAGGGTCAAGATCACCCTGGCCAGAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATCAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGTCTTGCTAACAGTATCCACCATGCCCGTGTCCTTATCCGCCAGATGCACATTCGCGTGCGCATGCAGC GTGTGCATATCCCCTCCCTTGAGGTTCATCTGCTCAGCCAGAAGCACATTGACTT ] [+] EMBL FR0055718 [ AGTTGGGTTTGCAGCAAGACCTATGTCACCCCCCGCCGACCC TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCGCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGG TGGGGA ] [+] EMBL FR0055200 [ GGTTTGCAGCAAGACCTATGTCACCCCCCGCCGTCCC TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTC GATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGG TGGTGAATATCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTGAAGATCTCCATATGGGGGTGGGAGCCCAAGTCGC ] [+] EMBL FR0056024 [ AAGACCTATGTCACCCCCCGCCGTCCC TTCGAGAAATCCCGTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGGATTACATCCTGGGTCTGAAGGTTGAAGATTTC TTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTA CCACCATGCCGGTGTCCTTAACCG CATAGGCACATTCCCGTG GGAAGCAGGTTGGTGAA ] [+] EMBL FR0056059 [ CCCCCCGCCGTCCCATTCTAGAAATCCCGTCTCGACCACGAGTTGAGGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGTGGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCACGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGCTGAGGGTAAGATGAAc ] [+] EMBL CA845748 [ TC TTGGAGCGGAGGCTGCAGACACAGGTCTTCACGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGTGTGCGCAAGCAGG TGGTGAATATCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTG AGATCTCCATATGGTGGTGGACGCCCAGGTCGCGTCAAGAGAAAGAACGCCAAGAAGGGCCAGGGTGGATCAGGAGGAGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGTTTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAc ] [+] EMBL FR0056288 [ AGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGTTTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAAAAAAAAAAAAAAAAAACCCGAGGGGGGGCCCGGTACCAACTTTTTGTCCCCTTAATG] consensusID : consensus_2655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAGATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGAGGATCAACTTCTCATGCTGTCCACTGAGATCAGTTAAAACATCTCAGCAAGGTCAATTCGGTATCAAAACCGTATACCTTGTCATTAGACATTGCCCAGAGACAATCCGGCCACTGAGGGCTTGGACTATGCCAATGAAGGCTGTGGTGTC] [+] EMBL FR0056613 [CTGCCAGAGAGCTGCTGACTCTGGATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAATCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAGATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCCACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGAGGATCAACTTCTCATGCTGTCCACTGAGATCAGTTAAAACATCTCAGCAAGGTCAATTCGGTATCAAAACCGTATACCTTGTCATTAGACATTGCCCAGAGACAATCCGGCCACTGAGGGCTTGGACTATGCCAATGAAGGCTGTGGTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2655#0 CCAGGAGTTGGGTTTGCAGCAAGACCTATGTCACCCCCCGCCGACCCTTCGAGAAATCCC 60 consensus_2655#1 ------------------------------------------------------------ consensus_2655#0 GTCTCGACCAGGAGTTGAAGCTCATTGGCGAATATGGGCTGAGGAACAAGCGTGAGGTGT 120 consensus_2655#1 ------------------------------------------------------------ consensus_2655#0 GGAGGGTCAAGTTCACCCTGGCCAAAATTCGCAAAGCTGCCAGAGAGCTGCTGACTCTGG 180 consensus_2655#1 ------------------------------------CTGCCAGAGAGCTGCTGACTCTGG 24 ************************ consensus_2655#0 ATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAA 240 consensus_2655#1 ATGAGAAGGACCCCAAGCGTCTGTTTGAAGGTAATGCCTTGCTGAGACGTCTGGTGAGAA 84 ************************************************************ consensus_2655#0 TCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAG 300 consensus_2655#1 TCGGTGTGTTGGATGAGGGTAAGATGAAGCTCGATTACATCCTGGGTCTGAAGGTTGAAG 144 ************************************************************ consensus_2655#0 ATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCC 360 consensus_2655#1 ATTTCTTGGAGCGGAGGCTGCAGACACAGGTCTTCAAGCTTGGCCTTGCTAAGAGTATCC 204 ************************************************************ consensus_2655#0 ACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGCGTGCGCAAGCAGGTGGTGAATA 420 consensus_2655#1 ACCATGCCCGTGTCCTTATCCGCCAGAGGCACATTCGAG-----GATCAACTTCT---CA 256 ************************************* * * ** * * * consensus_2655#0 TCCCCTCCTTTGTGGTTCGTCTGGACAGCCAGAAGCACATTGACTTCTCTCTGAAGATCT 480 consensus_2655#1 TGCTGTCCACTGAGATCAGTTAAAACATCTC--AGCAAGGTCAATTCGGTATCAAAA--- 311 * * *** ** * * ** *** * **** * * *** * * ** * consensus_2655#0 CCATATGGGGGTGGGAGCCCAGGTCGCGTCAAGAGAAAGAACG-CCAAGAAGGGCCAGGG 539 consensus_2655#1 CCGTATAC---CTTGTCATTAGACATTGCCCAGAGACAATCCGGCCACTGAGGGCTTGGA 368 ** *** * ** * * ***** * ** *** ***** ** consensus_2655#0 TGGATCAGGAGGAGCTGACGATGAGGAGGAAGATTAAGAAGGATGTTGTAAAGGGAGTGT 599 consensus_2655#1 CTATGCCAATGAAGGCTGTGGTGTC----------------------------------- 393 * * ** * ** consensus_2655#0 TTTAATGCTTCCTGTACCATCTTAATTTTCAATAAAAAAAAAAATGGTCTAAAAAAAAAA 659 consensus_2655#1 ------------------------------------------------------------ consensus_2655#0 AAAAAAAAACCCGAGGGGGGGCCCGGTACCAACTTTTTGTCCCCTTAATG 709 consensus_2655#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |