These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 832 fasta sequence [GCAGCGTGCTGAATGGGAAACGGCACCCCCTCTAGCAGTGCTGGATCCAGGCCCGAGGATAAGACCCAAAAGGCAGAGACTTGCACCACTGTCGGGAGCAACAGTCCGTCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAGGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAGACGGAGCAGACTTCGCCAAGTGGCGCTGCGGGCTGAAGATCAGCAGCACCACTCCATCTGAGCTGGCCATCTTGGAGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGAATGGTATTGATCCCATTGTGGAGCCCGAGATCCTC-CCCGATGGAGACCACGACCTGCAGCGCTGTCAGTATGTCACCGAGAAGGTGTAGGCTGCGGAGCACTAAGCTCTGCCAGACCACCACGTATACCTTGAAGGCACTCTGCTGAAACCCAGCATGGTTACAGCCGGACATT] [+] EMBL CA340970 [GCAGCGTGCTGAATGGGAAACGGCACCCCCTCTAGCAGTGCTGGATCCAGGCCCGAGGATAAGACCCAAAAGGCAGAGACTTGCACCACTGTCGGGAGCAACAGTCCGTCTGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAGACGGAGCAGACTTCGCCAAGTGG ] [+] EMBL FR0061458 [ AGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAGGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGGTTGCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGGCTGGACG ] [+] EMBL FR0063051 [ ACAGATTACGGCGTTCCCTTTTCCAAGCTGATCATTTACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAGACGGAGCAGACTTCGCCAAGTGGCGCTGCGTGCTGAAGATCAGCAGCACCACTCCATCTGAGCTGGCCATCTTGGAGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGAATGGTATTGTTCCCATTGTGGAGCCCGAGATCCTC CCCGATGGAGACCACGACCTGCAGCGCTGTCAGTATGTCACCGAAAAGGTGTAG ] [+] EMBL FR0063001 [ TTGCACGCAGTACAAGAAAGAGGGAGCAGACTTCGCCGAGTGGCTCTGCTGGCTGAAAATCAACAACACCACTCCATCTGAGCTGGCCATCTTGCTGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGAATGGTATTGATCCCATTGTGCAGCCCGAGATCCTCTCCCGATGGAGACCACGACCTGCAGCGCTGTCAGTATGTCACCGAGAAGGTGTTAGCTGCGGAGCACTAAGCTCTGCCAGACCACCACGTATACCTTGAAGGCACTCTGCTGAAACCCAGCATGGTTACAGCCGGACATT] consensusID : consensus_2661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 467 fasta sequence [CAGACTGAACCAGGAGGCACCTACGCATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC-TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA-CAGCTGTATCGGCGGAGTCATC-TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC-GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCT] [+] EMBL FR0062432 [CAGACTGAACCAGGAGGCACCTACGCATCCTCGACACCTAACAAACCTGCTCTGTACGCTCCCAGAGAACCGTTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGCGGAGTCATC TTCTTCCACGANACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCC ] [+] EMBL FR0062352 [ ACCAGGAGGCACCTACGCATCCTCGACACCTAACAAACCTGCTCTGTACGCTCCCAGAGAACCGTTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGGGGCTCCAGGAAAAGGCATCCTTGCTTGCTGATGAGTCCACCCGCAGCATGGCCAAACGCTTCACCCCCATCGGGGGTGAG ] [+] EMBL BU807655 [ aCACCTACGCATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGCGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTCAAGGTCT] [+] EMBL BU806179 [ aCACCTACGCATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGTGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAG ] [+] EMBL FR0062273 [ CGCTCCCAGAGAACCATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGACCAGCTGTATCGGCGGAGTCATCTTTTTTCCACGAAACGCTGGACCAGAAAACAGAT ] [+] EMBL FR0062988 [ ATTAGCAGCCGCGGTGACTCACCAGTGCCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGTCCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGNTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGCGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGCGGGTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGTCGGCATCAAGGGGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACT ] [+] EMBL FR0059554 [ ATTAGCAGCCACCATGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTCAAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGC TGCTGATGAGACCACCGGCAGCATGGCCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCCAGCTGCTCTTCACGGCCGACCAGCGCATCGA CAGCTGTATCGGTGGAGTCATC TTCTTCCACGAAACGCTGTACCAGAAAACAGATGACGGC GTTCCCTTTTCCAAGCTGATCAAAGACCGTGGCATTGTTGGCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACGGAGAGACAACCACTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2661#0 GCAGCGTGCTGAATGGGAAACGGCACCCCCTCTAGCAGTGCTGGATCCAGGCCCGAGGAT 60 consensus_2661#1 -------------------------------CAGACTGAACCAGG---AGGCACCTACGC 26 * * * * * **** * consensus_2661#0 AAGACCCAAAAGGCAGAGACTTGCACC--ACTGTCGGGAGCAACAGTCCGTCAGCCACCA 118 consensus_2661#1 ATCCTCGACACCGAACAAACCTGCTCTGTACGCTCCCAGAGAACCATTAG-CAGCCACCA 85 * * * * * * * ** *** * ** ** *** * * ********* consensus_2661#0 TGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAGGAAGGAGCTGCAGGAAATTGCTC 178 consensus_2661#1 TGACTCACCAGTACCCCGCGCTGACTCCTGAGCAGAAGAAGGAGCTGCAGGAAATTGCTC 145 ************************************ *********************** consensus_2661#0 AAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGG 238 consensus_2661#1 AAAAGATAGTGGCTCCAGGAAAAGGCATCCTTGCTGCTGATGAGTCCACCGGCAGCATGG 205 ************************************************************ consensus_2661#0 CCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCC 298 consensus_2661#1 CCAAACGCTTCACCCCCATCGGGGTTGAGAACACAGAGGAGAACAGGCGCCGCTACCGCC 265 ************************************************************ consensus_2661#0 AGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCC 358 consensus_2661#1 AGCTGCTCTTCACGGCCGACCAGCGCATCGACAGCTGTATCGGCGGAGTCATCTTCTTCC 325 ************************************************************ consensus_2661#0 ACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACC 418 consensus_2661#1 ACGAAACGCTGTACCAGAAAACAGATGACGGCGTTCCCTTTTCCAAGCTGATCAAAGACC 385 ************************************************************ consensus_2661#0 GTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACG 478 consensus_2661#1 GTGGCATTGTTGTCGGCATCAAGGTGGACAAAGGTGTTGTCCCTCTCGCTGGAACAAACG 445 ************************************************************ consensus_2661#0 GAGAGACAACCACTCAAGGTCTGGACGGGCTGTCTGAGCGTTGCGCGCAGTACAAGAAAG 538 consensus_2661#1 GAGAGACAACCACTCAAGGTCT-------------------------------------- 467 ********************** consensus_2661#0 ACGGAGCAGACTTCGCCAAGTGGCGCTGCGGGCTGAAGATCAGCAGCACCACTCCATCTG 598 consensus_2661#1 ------------------------------------------------------------ consensus_2661#0 AGCTGGCCATCTTGGAGAATGCTAATGTTCTTGCACGATATGCCAGCATCTGCCAGCAGA 658 consensus_2661#1 ------------------------------------------------------------ consensus_2661#0 ATGGTATTGATCCCATTGTGGAGCCCGAGATCCTCCCCGATGGAGACCACGACCTGCAGC 718 consensus_2661#1 ------------------------------------------------------------ consensus_2661#0 GCTGTCAGTATGTCACCGAGAAGGTGTAGGCTGCGGAGCACTAAGCTCTGCCAGACCACC 778 consensus_2661#1 ------------------------------------------------------------ consensus_2661#0 ACGTATACCTTGAAGGCACTCTGCTGAAACCCAGCATGGTTACAGCCGGACATT 832 consensus_2661#1 ------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |