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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 753 fasta sequence
[TTTTTTTTTTTTGATGTTGGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAGCTCCAACGTGGGGAGAAATAGCACCGAATGACTGTGG]
[+] EMBL CA845353 [TTTTTTTTTTTTGATGTTGGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACAC ]
[+] EMBL CA845189 [ TTTTTGATGTTGGAATGACTTTTATTGGACAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGT ]
[-] EMBL CA845672 [ AATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTAAGGCTCCAACGTGG ]
[-] EMBL CA591363 [ GGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAGCTCCAACGTGGGGAGAAATAGCACCGAATGACTGTGG]
[-] EMBL FR0055731 [ CCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAGCACCAACGT ]
[-] EMBL FR0055315 [ CAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAANCCACAGGGAGATCTCCTTTTTGGCACTTCCTACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCATCCATGATTCGTGATTACAGCTCCAACGTGGTGAGA ]
[-] EMBL FR0055441 [ CAGCTCGCCTTCCTGAAACCCCAGGGAGATCTCCTTTTTGGCACTTACCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTACCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCATCCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTATGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCATCCATGATTCGTGATAAC ]
[-] EMBL FR0057670 [ TCCAGGCTTAGACTCTGCAGGTTTGGTTCCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTC ]
consensusID : consensus_2669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence
[GGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCTAAACACACGGACACAGTTCAAGCGAACATCCCAAAGTCAAGACAAGTGTCACAGTCGAATACTGGCAGATGTGGGACATATTAGGCAG]
[+] EMBL CA329470 [GGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCTAAACACACGGACACAGTTCAAGCGAACATCCCAAAGTCAAGACAAGTGTCACAGTCGAATACTGGCAGATGTGGGACATATTAGGCAG]
[-] EMBL FR0055898 [ TTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGT ]
consensusID : consensus_2669#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[GGCCATTTTCTCTGTTCATGCAGATTCATGTTCAACATTTTTTATAAAAGAATGAATCCAGTATGATCGTGTTGCCTTAGATGTTACATCAGGAGGCAGTTTGCCTAATCAGCCAGGCAACAGTCAGGAATAGACAAGTGGACTAATCAGCTCAGAGCTTTAACTTCTACCAGAGGCTCAAAGATGTACCGAGGGAAGTGTTATGAAAGAAAATGACAAAAGATCACACAAAGTCCACGTTTTAAAGTTTGCACACCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAGCGATGCCTCTCTGCACACCGTCAGGCTTGCCGGCAATGAAGGTACGCTCAT]
[-] EMBL FR0060096 [GGCCATTTTCTCTGTTCATGCAGATTCATGTTCAACATTTTTTATAAAAGAATGAATCCAGTATGATCGTGTTGCCTTAGATGTTACATCAGGAGGCAGTTTGCCTAATCAGCCAGGCAACAGTCAGGAATAGACAAGTGGACTAATCAGCTCAGAGCTTTAACTTCTACCAGAGGCTCAAAGATGTACCGAGGGAAGTGTTATGAAAGAAAATGACAAAAGATCACACAAAGTCCACGTTTTAAAGTTTGCACACCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAGCGATGCCTCTCTGCACACCGTCAGGCTTGCCGGCAATGAAGGTACGCTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2669#0 TTTTTTTTTTTTGATGTTGGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTT 60
consensus_2669#1 ------------------GGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTT 42
consensus_2669#2 -------------------GGCCATTTTCTCTGTTCATGCAGATTCATGTTCAACATTTT 41
* ** * * * ****** ** * **** ***
consensus_2669#0 CAA--AAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACA 118
consensus_2669#1 CAA--AAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACA 100
consensus_2669#2 TTATAAAAGAATGAATCCAGTATGATCGTGTTGCCTTAGATGTTACATC----------A 91
* ** ***** ** * * ** ** * ** *** *
consensus_2669#0 GGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAG 178
consensus_2669#1 GGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAG 160
consensus_2669#2 GGAGGCAGTTT---GCCTAATCAGCCAGGCAACAGTC---AGGAATAGACAAG-TGGACT 144
***** * * * * * * * *** *** * * ** **** **
consensus_2669#0 AAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTG 238
consensus_2669#1 AAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTG 220
consensus_2669#2 AATCAGCTCAGAGCT-TTAACTTCTACCAGAGGCTCAAAGATGTACCGAGGGAAGTGTTA 203
** ** **** * * * **** * *** * * * *** *
consensus_2669#0 TGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAA 298
consensus_2669#1 TGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAA 280
consensus_2669#2 TGAAAGAA-AATGACAAAAGATCACACAAAGTCCACGTTTTAA-AGTTTGCACACCTGAA 261
** * * * ** * **** * * ** * ** ******
consensus_2669#0 ACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCC 358
consensus_2669#1 ACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCC 340
consensus_2669#2 GCATCTTCATGCCCACAAGTTTGAAGCCTTTCATC---TCGAATCTTTTGAGGATCTCTC 318
* * * * * **** * ** ** ** * * ** *** * *
consensus_2669#0 TGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGG 418
consensus_2669#1 TGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGG 400
consensus_2669#2 CAGCGATGCC----------TCTCTGCACACCGT--CAGGCTTGCCGGCAATGAAGGTAC 366
** * **** * * ** ******* * * *
consensus_2669#0 TTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAA 478
consensus_2669#1 TTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCTAAACA- 459
consensus_2669#2 GCTCAT------------------------------------------------------ 372
***
consensus_2669#0 CCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGA-AAGAATGGTCTTTCCTT-CAG 536
consensus_2669#1 -CACGGACACAGTTCAAGCGAACATCCCAAAGTCAAGACAAGTGTCACAGTCGAATACTG 518
consensus_2669#2 ------------------------------------------------------------
consensus_2669#0 GTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAG 596
consensus_2669#1 GCAGATGTGGGACATATTAGGCAG------------------------------------ 542
consensus_2669#2 ------------------------------------------------------------
consensus_2669#0 TTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACC 656
consensus_2669#1 ------------------------------------------------------------
consensus_2669#2 ------------------------------------------------------------
consensus_2669#0 GTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAG 716
consensus_2669#1 ------------------------------------------------------------
consensus_2669#2 ------------------------------------------------------------
consensus_2669#0 CTCCAACGTGGGGAGAAATAGCACCGAATGACTGTGG 753
consensus_2669#1 -------------------------------------
consensus_2669#2 -------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |