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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 496 fasta sequence
[CCCGGCAGNCACACTCGAGCCCTCTGGNCAGTTACCGTCACTCTGCCTGTTCCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA-GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCAGGAAAAAGGAAGAAGAGGAGCTGATTCAACTGAAAGAGCGAA]
[+] EMBL FR0062578 [CCCGGCAGNCACACTCGAGCCCTCTGGNCAGTTACCGTCACTCTGCCTGTTCCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGGAAAAGGATGGAGAGGGACC ]
[+] EMBL FR0063054 [ CAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCA ]
[+] EMBL FR0062243 [ GATTCACTGCTACAGGAGGAAAAGACTTTCCCTTATGGGTGACACAGAGGAAACGGTGGAGGAGCACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGTAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGA ]
[+] EMBL FR0062485 [ TTCACTGCCACTTGAGGAAAAGACTTTCCCTTATGTCTGGCACAGAGGAAACGGTGGAGGAGTACGAGCCAGAAGTGGAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTA GAGGAGGAGGAAGAGGAGGATGCGGAAGAGGTCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGG TTTTGATGATATTCATCGTAAAAGGGATGAGAAGGACC ]
[+] EMBL FR0062475 [ CACTGCCACAGGTTGAAAAGACTTTCCCTTATGTCTGACGCAGAGGAAACGGTGGAGGAGTACGAGGAACAAGTGTAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTTATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGGGGATTTTGATGATTTT ]
[+] EMBL FR0062426 [ GGAAAAGACTTTCCCTTATGTCTGACATAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTANAAGGATGGAGAAGGAC ]
[+] EMBL FR0062915 [ GTAGGAGTACGAGGAAGAAGTGGAAGAAGAGGGGGCCGATGAAGCAGGTGAGCAGGAGGTA GAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGGGGATTTTGATGATATTCATCGTAAAAGGATGGGGAAGGACCTGATGGAGCTCCAGACCTTGATCGGAGTTCACTTTGAGAGCAGGAAAAAGGAAG ]
[+] EMBL FR0062112 [ ACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAATGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGATCACTTTGAGAGCAGGAAAAAGGAAGAAGAGGAGCTGATTCAACTGAAAGAGCGAA]
consensusID : consensus_2673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence
[CCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACGAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATA-TTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGGTCACTTTGAGAGCGGGAAAAAGGAAGAGGGGAGCTGA]
[+] EMBL FR0062412 [CCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGGGGCGAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTTGACG ]
[+] EMBL FR0062255 [ AGATTTACTGCCACAGGAGGAAAAGACTTTCGGTTATGTCTGACAC AGAGGAAACGGCGCAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGA AGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGTAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATA TTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCAGGAAAAAGGAAGAGGGGAGCTGA]
[+] EMBL FR0062947 [ AGACTTTCCCTTATGTCTGACACGGGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGTAAGAAGAGGAGGCCGATGAAGCAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATA TTCATCGGAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCG AGGTCACTTTGAGAGCGGGAAAAAGGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2673#0 CCCGGCAGNCACACTCGAGCCCTCTGGNCAGTTACCGTCACTCTGCCTGTTCCTCAGATT 60
consensus_2673#1 ---------------------------------------------------CCTCAGATT 9
*********
consensus_2673#0 CACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACAC-AGAGGAAACGGTGGAGGA 119
consensus_2673#1 CACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACGAGAGGAAACGGTGGAGGA 69
***************************************** ******************
consensus_2673#0 GTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGA 179
consensus_2673#1 GTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAG------------------- 110
*****************************************
consensus_2673#0 GGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGA 239
consensus_2673#1 --------------------------AGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGA 144
**********************************
consensus_2673#0 GGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGA 299
consensus_2673#1 GGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGA 204
************************************************************
consensus_2673#0 GGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGA 359
consensus_2673#1 GGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGA 264
************************************************************
consensus_2673#0 TGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGA 419
consensus_2673#1 TGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGA 324
************************************************************
consensus_2673#0 GCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCAGGAAAAAGGAAGAAGAGGAGCTGAT 479
consensus_2673#1 GCTCCAGACCTTGATCGAAGGTCACTTTGAGAGCGGGAAAAAGGAAGA-GGGGAGCTGA- 382
******************** ************* ************* * ********
consensus_2673#0 TCAACTGAAAGAGCGAA 496
consensus_2673#1 -----------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |