These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 456 fasta sequence [CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT-GACGCTGCCA-TCCTGGGGGG--CTCCATGCCACGTAAGGAGGGGATGGAGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGGACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAATCCAGCAAACACCAACTGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC] [+] EMBL FR0062686 [CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAAATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAG CAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGAGAGGTGATCCCCACTGACGAGGTGGAGGGGGGCTTCAAGGATATT GACGCTGCCA T ] [+] EMBL FR0063070 [ gCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCGGCTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTGGTGGG CTCCATGCCACGTAAGGAGGGGATGGAGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGGACAAGTATGCCAAGAAGACCGTTAAGGTTCT GGGGGGCGGAAATCCAGCAAACACCAACTGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC] [+] EMBL FR0062724 [ GAACCTATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCTCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGGGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCCCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGGGGAAGGGGTCTTCAAGGAAATTGGACGCCGCCATTCCTGGGGGGGCTTCCAT ] [+] EMBL FR0062931 [ CCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCGGGTACTCTCTGCTGGGCAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGGCCTGTTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTGGGGGG CTCCATGCCACGTAAGGAGGGGATGGAGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGGACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAAT ] [+] EMBL FR0062690 [ TTGTTGTGACTGGCGCCGCT GCCAGATCTCCTACTCTCTGCTGTACAGCATCGCCAAGAGAGATGTGTTTGGCAAGCACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGTGCTTCAAGGATATT GACGCTGCCA TCCTGGGGGG CTCCATGCCACGTAAGGAGGGGATTGAGAGGAAGG ] [+] EMBL FR0062141 [ GACTGGGGCCGCTGTCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGCGGTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGGGGGCTTCAAGGATATT GACGCTGCCA TTCTGGTGGG CTCCATGCCACGTAAGGAGGGGATGGTGAGGAAGGACCTGCTTAAGGCCAACGTGGCTATTT ] [+] EMBL FR0063000 [ GGCGCCGCTGGCCAGATCGGCTACTCTCTGCTGTACAGCATCGCCAAGGGAGGTGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGGGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGGGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTG ] [+] EMBL FR0062826 [ TGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTGGTGGG CTCCATGCCACG ] consensusID : consensus_2674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 350 fasta sequence [ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGAGGGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGGGATTGGCTGATGATGAAGGAGCC-TCAGCAGCAAATCAGAGCAGGAGGCAGGAAGGGACATGACTGAAGCCCAGACTGAAAACAACATAATCAACGGGGAAGGCATCATATCGCCAGTTTATCTGGA] [+] EMBL FR0062634 [ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGGGATTGGCTGATGATGAAGGAGCCTTCAGCAGCAAATCAGAGCAGGCAGCAGGAAGGGACATGACTGAAGTCCAGACTGATAACAACATAATCAACGGGGAAGGCATCATATCGCCAGTTTATCTGGA] [+] EMBL FR0059232 [ TTGTTGTGACTGACGCCGCTGGCCAGAGGGCCTACTCTCTGCTGTACAGCATCGCCCAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGCGATTGGCTGATGATGAAGGAGCC TCAGCAGCAAATCAGAGCAGCAGTCAGGAA GGACATGACTGAAGCCCAGACTGAAAACAACATAATCAACa ] consensusID : consensus_2674#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAACCTGGATGCTGGGCATGTAATCTGCAGAGATGCTATGTTACATAATGGCTGAACCATGAATGATGATATCATACTAACATGACAATCACGCCTGTGGTAATGCTTTAATCTCCGCAAAGATCAGGAGGGATGAGTTTCAGTTGTACGCGCTGAGGCCAGAGGCAGAACTGACTCAATCTTCATT] [+] EMBL FR0060151 [ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAACCTGGATGCTGGGCATGTAATCTGCAGAGATGCTATGTTACATAATGGCTGAACCATGAATGATGATATCATACTAACATGACAATCACGCCTGTGGTAATGCTTTAATCTCCGCAAAGATCAGGAGGGATGAGTTTCAGTTGTACGCGCTGAGGCCAGAGGCAGAACTGACTCAATCTTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2674#0 CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCG 60 consensus_2674#1 -----------ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGAGGG 49 consensus_2674#2 -------------------ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCG 41 ***************************** ******** * consensus_2674#0 CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCA 120 consensus_2674#1 CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCA 109 consensus_2674#2 CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAA 101 ***************************************************** ** * consensus_2674#0 TCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGC 180 consensus_2674#1 TCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGC 169 consensus_2674#2 CCTGGAT---GCTGGGCATGTAATC--TGCAGA-GATGCTATGTTACATAATGGCTGAAC 155 * * * ***** *** * *** * * *** * * ** * consensus_2674#0 TGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGG 240 consensus_2674#1 TGCAGGATTGCGCCCTCCCACTTTTGAGGGGAG-GACGGTCATAAATGAC----AACTGG 224 consensus_2674#2 CAT-GAATGATGATATCATACTAACATGACAAT-CACGCCTGT-GGTAATG---CTTTAA 209 * ** * ** *** * * * * consensus_2674#0 GCTTCAAGGATATTGACGCTGCCATCCTGGGGGGCTCCATGCCACGTAAGGAGGGGATGG 300 consensus_2674#1 GATTGGCTGATGATGAAGGAGCC--TCAGCAGCAAATCAGAGCAGG--AGGCAGGAAGGG 280 consensus_2674#2 TCTCCGCAAAGATCAGGAGGGATGAGTTTCAGTTGTACGCGCTGAG---GCCAGAGGCAG 266 * * * * * * * * * consensus_2674#0 AGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGG 360 consensus_2674#1 ACATGACTGAA--GCCCAGACTGAAAACAAC-ATAATCAACGGGGAAGGCATCATATCG- 336 consensus_2674#2 AACTGACTCAA-TCTTCATT---------------------------------------- 285 * ** * ** consensus_2674#0 ACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAATCCAGCAAACACCAAC 420 consensus_2674#1 -CCAGTTTATCTGGA--------------------------------------------- 350 consensus_2674#2 ------------------------------------------------------------ consensus_2674#0 TGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC 456 consensus_2674#1 ------------------------------------ consensus_2674#2 ------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |