These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 816 fasta sequence [TGTCTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCAGTGGAGGCCTTCCTGCGCCAGCTGCACAACCCCATCGACTCCCTGCCCGCCCAGCTTTTCCATGTGGTGGTCTTCTCCCTGCTCCTGTCCTACTTTCCCTCACCATACCAGCGCTGGATCTGTTGTAAGAAGGCCCATGAGCTGCTGGAGCTGCACGGCCTGCTGCTCATCATCACGCCCGACTCTTCCCACCAGAACCGCCACGCCTTA] [+] EMBL CA590041 [TGTCTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCT ] [+] EMBL BU807442 [ CGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATAAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGC ] [+] EMBL CA588198 [ CTTGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCAGTGGAGGCCTTCCTGCGCCAGCTGCACAACCCCATCGACTCCCTGCCCGCCCAGCTTTTCCATGTGGTGGTCTTCTCCCTGCTCCTGTCCTACTTTCCCTCACCATACCAGCGCTGGATCTGTTGTAAGAAGGCCCATGAGCTGCTGGAGCTGCACGGCCTGCTGCTCATCATCACGCCCGACTCTTCCCACCAGAACCGCCACGCCTTA] [+] EMBL CA590175 [ ATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTT ] [+] EMBL FR0059557 [ CATCGGAAACATGAACGAGAGGGAGGCTTATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGGCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGGGGGATGAA ] consensusID : consensus_2680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 807 fasta sequence [CTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCA] [+] EMBL CA591090 [CTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCT ] [+] EMBL CA589560 [ AACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCG ] [+] EMBL FR0059423 [ ACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGGCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAAGGGGGTGACTTTGACAAGAATTGGCGGGAGCCC ] [+] EMBL BU806420 [ TGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCA] consensusID : consensus_2680#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 467 fasta sequence [ACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCGGGGGGAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGGGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCCTGTGCAAGGAGTACTGTCTTTTAGTGCTCTCACCTGATGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCA] [+] EMBL CA590956 [ACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAG GTACAAATCGTCCTGTCTTTTAGTGCTCTCACCTGATGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCA] [+] EMBL FR0059574 [ ATACATGGGATGCGGGGGGAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGGGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACTGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCCTGTGCCAGGAATACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2680#0 TGTCTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTG 60 consensus_2680#2 -----------ACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTG 49 consensus_2680#1 ---CTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTG 57 ************************************************* consensus_2680#0 TACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACT 120 consensus_2680#2 TACATACATGGGATGCGGGGGGAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACT 109 consensus_2680#1 TACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACT 117 **************** ** ************************************** consensus_2680#0 GGACCCAAGGGATCCACTGACATGCCCATCACAG-------------------------- 154 consensus_2680#2 GGACCCAAGGGATCCACTGACATGCCCATCACAG-------------------------- 143 consensus_2680#1 GGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAA 177 ********************************** consensus_2680#0 ------------------------------------------------------------ consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 GGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGC 237 consensus_2680#0 ------------------------------------------------------------ consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 CACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAG 297 consensus_2680#0 ----------------------------------------------------------TG 156 consensus_2680#2 ----------------------------------------------------------TG 145 consensus_2680#1 AAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTG 357 ** consensus_2680#0 GGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATAT 216 consensus_2680#2 GGGGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATAT 205 consensus_2680#1 GGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATAT 417 ** ********************************************************* consensus_2680#0 GCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGC 276 consensus_2680#2 GCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGC 265 consensus_2680#1 GCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGC 477 ************************************************************ consensus_2680#0 CGGATCGAATGGTGCCGCAGC--------------------------------------- 297 consensus_2680#2 CGGATCGAATGGTGCCGCAGCCTGTGCAAGGAGTACTGTCTTTTAGTGCTCTCACCTGAT 325 consensus_2680#1 CGGATCGAATGGTGCCGCAGC--------------------------------------- 498 ********************* consensus_2680#0 --GTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGA 355 consensus_2680#2 GCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGA 385 consensus_2680#1 --GTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGA 556 ********************************************************** consensus_2680#0 AAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCG 415 consensus_2680#2 AAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCG 445 consensus_2680#1 AAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCG 616 ************************************************************ consensus_2680#0 CCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCT 475 consensus_2680#2 CCATCCGCAGCTCGCTCTCGCA-------------------------------------- 467 consensus_2680#1 CCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCT 676 ********************** consensus_2680#0 TCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAG 535 consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 TCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAG 736 consensus_2680#0 TTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTG 595 consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 TTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTG 796 consensus_2680#0 CAGGCGATGCAGTGGAGGCCTTCCTGCGCCAGCTGCACAACCCCATCGACTCCCTGCCCG 655 consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 CAGGCGATGCA------------------------------------------------- 807 consensus_2680#0 CCCAGCTTTTCCATGTGGTGGTCTTCTCCCTGCTCCTGTCCTACTTTCCCTCACCATACC 715 consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 ------------------------------------------------------------ consensus_2680#0 AGCGCTGGATCTGTTGTAAGAAGGCCCATGAGCTGCTGGAGCTGCACGGCCTGCTGCTCA 775 consensus_2680#2 ------------------------------------------------------------ consensus_2680#1 ------------------------------------------------------------ consensus_2680#0 TCATCACGCCCGACTCTTCCCACCAGAACCGCCACGCCTTA 816 consensus_2680#2 ----------------------------------------- consensus_2680#1 ----------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |