These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 596 fasta sequence [CTTCCTCAAGAGACACACAGAGACAATGGCTCCTCGTAAAGGGAAAGAGAAGAAGGAGGAGCAGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT-GGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCATCAGATTTTTTTTCTGCTAATAAAAAGCGAAACCAAGTTTTGTGCACACACTTGTGTAACTCTGTTCACCCGGCAGTTCACTGTGTTGTACTAAAACACGATCCCAAA] [+] EMBL CA589422 [CTTCCTCAAGAGACACACAGAGACAATGGCTCCTCGTAAAGGGAAAGAGAAGAAGGAGGAGCAGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCATCAGATTTTTTTTCTGCTA ] [+] EMBL CA589281 [CTTCCTCAAGAGACACACAGAGACAATGGCTCCTCGTAAAGGGAAAGAGAAGAAGGAGGAGCAGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCTTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTC ] [-] EMBL CA332513 [ CTCGTAAAGGGAAAGAGAAGAAGGAGGAGCAGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCTTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCATCAGATTTTTTTTCTGCTAATAAAAAGCG ] [-] EMBL CA588815 [ AAAGGGAAAGAGAAGAAGGAGGAGCAGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAAAAAGAAGGAAGGGTG ] [+] EMBL FR0058156 [ GAAAGAGAAGAAGGAGGAGCAGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACANAGACTCCTGNTCCTGGAGCTCAGT ] [+] EMBL FR0055500 [ AGGTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAGGGAAACAATCTGCCGTGTGACAGGCGGTATGAGGGTGAAGGCAGACAGAGATGAGTCGTCTCGATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCATCGAGCTTGGGGACACTGCGCTGCACATCAAGTTGAGAGCCACTGGGAGGAGACAGGGCAAA ] [+] EMBL CA330379 [ GTTATCAGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTC ] [+] EMBL FR0056182 [ AGCCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCATCAGATTTTTTTTC ] [+] EMBL FR0056634 [ CTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCAAC ] [+] EMBL FR0055757 [ TCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCACACAGCTTGGTATCACTGCTCTGCACATCAAGTTGAGAGCCACT GGTGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAATGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCATCAGATTTTTTTT ] [+] EMBL CA333469 [ ACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACGTCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGTAAAACTGCATCAGATTTTTTTTCTGCTAATAAAAAGCGAAACCAAGTTTTGTGCACACACTTGTGTAACTCTGTTCACCCGGCAGTTCACTGTGTTGTACTAAAACACGATCCCAAA] consensusID : consensus_2681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [TTCGCTTTTTATTAGCAGAAAAAAAATCTGATGCAGTTTTACAGACGGCGACCGCGACGTCCACCCTTCCTTCGGGTTGAATCTGATGGAATTGGAGTGACGTCCTCTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACTGGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAA] [-] EMBL CA845091 [TTCGCTTTTTATTAGCAGAAAAAAAATCTGATGCAGTTTTACAGACGGCGACCGCGACGTCCACCCTTCCTTCGGGTTGAATCTGATGGAATTGGAGTGACGTCCTCTGTGTGTCACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAACAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCATATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTGCTCTGCACATCAAGTTGAGAGCCACTGGAGGAAACAGGACAAAGACTCCTGGTCCTGGAGCTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2681#0 CTTCCTCAAGAGACACACAGAGACAATGGCTCCTCGTAAAGGGAAAGAGAAGAAGGAGGA 60 consensus_2681#1 TTCGCTTTTTATTAGCAGAAAAAAAAT-----CTGATGCAGTTTTACAGACGGCGACCGC 55 * ** * ** * * * *** ** * ** * *** * * * consensus_2681#0 GCAGGTTATCAG-CCTGGGTCCTCAGGTGGCTGAAGGAGAGAACGTGTTTGGTGTGTGTC 119 consensus_2681#1 GACGTCCACCCTTCCTTCGGGTTGAATCTGATGGAATTGGAGTGACGTCCTCTGTGTGTC 115 * * * * *** * * * * ** * * ** ******** consensus_2681#0 ACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAA 179 consensus_2681#1 ACATCTTCGCCTCCTTCAACGATACCTTTGTCCATGTCACTGACCTGTCTGGCAAGGAAA 175 ************************************************************ consensus_2681#0 CAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCAT 239 consensus_2681#1 CAATCTGCCGTGTGACAGGCGGTATGAAGGTGAAGGCAGACAGAGATGAGTCTTCTCCAT 235 ************************************************************ consensus_2681#0 ATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTG 299 consensus_2681#1 ATGCTGCCATGTTGGCAGCTCAGGATGTTGCCCAGCGCTGCAAAGAGCTTGGAATCACTG 295 ************************************************************ consensus_2681#0 CTCTGCACATCAAGTTGAGAGCCACTGGAGGAAACAGGACAAAGACTCCTGGTCCTGGAG 359 consensus_2681#1 CTCTGCACATCAAGTTGAGAGCCACTGGAGGAAACAGGACAAAGACTCCTGGTCCTGGAG 355 ************************************************************ consensus_2681#0 CTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAAAATTGGACGCATAGAGGACG 419 consensus_2681#1 CTCAGTCTGCCCTCAGAGCTCTGGCTCGTTCCGGCATGAA-------------------- 395 **************************************** consensus_2681#0 TCACTCCAATTCCATCAGATTCAACCCGAAGGAAGGGTGGACGTCGCGGTCGCCGTCTGT 479 consensus_2681#1 ------------------------------------------------------------ consensus_2681#0 AAAACTGCATCAGATTTTTTTTCTGCTAATAAAAAGCGAAACCAAGTTTTGTGCACACAC 539 consensus_2681#1 ------------------------------------------------------------ consensus_2681#0 TTGTGTAACTCTGTTCACCCGGCAGTTCACTGTGTTGTACTAAAACACGATCCCAAA 596 consensus_2681#1 --------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |