These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 589 fasta sequence [AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGC-AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC] [+] EMBL FR0055138 [AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGC AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCATGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTT ] [+] EMBL CA845268 [ CCGGGTAAACAGCCACCATGACGAACACAAATGTC AACAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGA ] [+] EMBL FR0057980 [ TGACGAACACAATTGGC AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAG ] [+] EMBL FR0055332 [ ACAAAGGGCAAAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTT ] [+] EMBL FR0056017 [ GC AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGGCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCANGAAGAATGCACCCCAGCTGCTGGAGCCCATCC ] [+] EMBL FR0057783 [ GAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGGTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGGTATCATGGCAAAACAGGACGTGTGTACAATGGAACCCAGCACGCTGGTGGCATCATTGGCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGATTTCTGCAGCGCGTGAAAGAAAACGATGCTAAAAAGCTGTAGGCCAAGCACAATGGGACCTGGGTGGA ] [+] EMBL FR0056439 [ ACAAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACANGCAAGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGT ] [+] EMBL CA845101 [ GCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAACAAAATGGCACCTGGGTGGAACTGAAACGTCAAGCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCACACTGCTGGAAACCATC ] [+] EMBL CA846757 [ ACAGGACGTGTGTACAATGTAACCCTGCACCCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGTTCTCTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACAC ] [+] EMBL CA330393 [ AGCACTCAAAGAGCAGGGACAGATTTCTGCAGCGCGACAAAGAAAACGATGCTAAAAAGATGGAGGACAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGAGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCA ] [+] EMBL CA341110 [ GCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTAC ] [+] EMBL FR0057046 [ TTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC] consensusID : consensus_2698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [GTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCAACNNCCCAGGCCTGGCCTGGGGAGCCCCCCATTCCCCCATAATGAAAGTTTCCATTGGGCATAATGGAAGCTGGAAAAAAATTAAATGGGATTTGGAACCCCTAAAAAA] [+] EMBL CA845530 [GTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCAACNNCCCAGGCCTGGCCTGGGGAGCCCCCCATTCCCCCATAATGAAAGTTTCCATTGGGCATAATGGAAGCTGGAAAAAAATTAAATGGGATTTGGAACCCCTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2698#0 AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGCAAGAGGAGGGGTACCAGGTAC 60 consensus_2698#1 ------------------------------------------------------------ consensus_2698#0 ATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATC 120 consensus_2698#1 ------------------------------------------------------------ consensus_2698#0 TACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCT 180 consensus_2698#1 ------------------------------------------------------------ consensus_2698#0 CACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGC 240 consensus_2698#1 ------------------------------------------------------------ consensus_2698#0 ATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATT 300 consensus_2698#1 ------------------------------------------------------------ consensus_2698#0 GAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGAT 360 consensus_2698#1 ------------------------------------------------------------ consensus_2698#0 GCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCT 420 consensus_2698#1 ------------------------------------GTGGAACTGAAACGTCAGCCCGCT 24 ************************ consensus_2698#0 CCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCC 480 consensus_2698#1 CCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCA-----ACNNCCCAGGCCT 79 ****************************************** * * *** consensus_2698#0 ATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAA 540 consensus_2698#1 GGCCTGGG-GAGCCC----CCCATTCCCCCATAATGAAAGTTTCCATTGG---GCATAAT 131 ** *** * * * * * ** ** * *** * ***** consensus_2698#0 AAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC 589 consensus_2698#1 GGAAGCTGGAAAAAAATT--AAATGGGATTTGGAACCCCTAAAAAA--- 175 ** ******* * * *** ** *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |