These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_27#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGGGAGGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCACGGATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACCTAAACACAACAGCCGGATTTTTTCGGAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGCATCAGGCCATGGACGACCCCATGGAGGAGGGA] [+] EMBL FR0059161 [TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGGGAGGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCACGGATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACCTAAACACAACAGCCGGATTTTTTCGGAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGCATCAGGCCATGGACGACCCCATGGAGGAGGGA] consensusID : consensus_27#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGAATCCTGGCACAAGATGGAGGTAAACAGCGTTAGTAGTGAGATCAATGGGCATCAGGCCATGGACGAGCCCATGGAGGAGGGAGAGTCTTTCTCACACTGCGATGAAGGGACATATGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTGTGAGAAAGCCGAGCCGTCTCAGTTCGAACTGCTCAAAGTCCTCGGCCAGGGTTCTTTTGGCAAGGTATTTC] [+] EMBL FR0060372 [GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGAATCCTGGCACAAGATGGAGGTAAACAGCGTTAGTAGTGAGATCAATGGGCATCAGGCCATGGACGAGCCCATGGAGGAGGGAGAGTCTTTCTCACACTGCGATGAAGGGACATATGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTGTGAGAAAGCCGAGCCGTCTCAGTTCGAACTGCTCAAAGTCCTCGGCCAGGGTTCTTTTGGCAAGGTATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_27#0 --TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGG 58 consensus_27#1 GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACG-ATGCCT-----TAG 54 *** ** ** * ** * ** * * *** * **** * * consensus_27#0 GAGGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCA 118 consensus_27#1 ACTTGGAGAGGAATCCTGGCACAAGATGGAGGT-AAACAGCGTTAG--TAGTG------- 104 * ** ** * *** * * *** * ** * * ** ** * consensus_27#0 CGGATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACC 178 consensus_27#1 -AGATCAATGGGCATCAGGCCATGGACGAGCCCATGGAGGA-GGGAGAGTCTTTCTCAC- 161 **** * ** ** * ** ** * * ** ** * **** consensus_27#0 TAAACACAACAGCCGGATTTTTTCGGAGGAACAGAT-ATGCAACGTGGAGCGGGGGTCTA 237 consensus_27#1 --ACTGCGATGAAGGGACATATGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTG 219 * * * *** * * **** * ** * ** * ** * ** * consensus_27#0 GGTAGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGC 297 consensus_27#1 TGAGAAAGCCGAGCCGTCTCAGTTCGAACTGCTCA------AAGTCCTCGGCCAGGGTTC 273 * * *** * * * ** ** * ** *** * ** * * consensus_27#0 ATCAGGCCATGGACGACCCCATGGAGGAGGGA 329 consensus_27#1 TTTTGGCAAGGTATTTC--------------- 290 * *** * * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |