These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 779 fasta sequence [AAGCGAATCGATTCACTGACGTGACAAATAACTCCAATTTA-TCAGA--AGA--GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC-TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC-GGTGGAGTAC-AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAGGCAACATGTGCCACGTCTGGAGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAATCAGCTCAAGAATAAGTCATAATCACCAACTAAAGTGCTCCACACGATCTATGGCCTAGTTTTCCT] [+] EMBL CA846195 [AACCGTTACAATTCACTGACGTGACAAATAACTCCAATTTA TCAGC ACATTTAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCTAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAGGCAACATGTGCCACGTCTGGAGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAATCAGCTCAAGAATAAGTCATAATCACCAACTAAAGTGCTCCACACGATCTATGGCCTAGTTTTCCT] [+] EMBL CA589465 [AAGTGAATCGATTCACTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAA ] [+] EMBL BU808245 [ AATCGATTCACTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCAC TTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGG ] [+] EMBL BU806399 [ AATCGATTCACTGACGTGACAAATAACTCCAATTTA CCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGAC ] [+] EMBL BU805724 [ AATCGATTCACTGACGTGACAAATAACTCCAATTTATTCAGANNAGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGT ] [+] EMBL BU808350 [ CACTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCTAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGTGTGTCGGCGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCTAAGAGCTCTCGAGAATGTTGAACTAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGGAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGC ] [+] EMBL CA591219 [ CTGACGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAG ] [+] EMBL BU808348 [ CGTGACAAATAACTCCAATTTA TCAGA AGA GAGAAACGATTAGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGAGAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGTGATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCAGAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGG ] [+] EMBL FR0061123 [ AACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTCTTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGGGGGATGTCGGGGGGCAGGACA ] [+] EMBL FR0062049 [ GTTTGAGTGGCGTGCGGTAAAGATAAACTCTTTTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGACGGGGGGAGTACAAAGAACATCAGTT ] [+] EMBL FR0061328 [ GCGGGCCTTAAAGATAAACTCTTTTGTTCATTACTGGNTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTCTTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGGGGGGGAAGTCGGTGGCCAGGACAA ] [+] EMBL FR0061697 [ TTGTTCATTACTGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCGACAGCAGCAATGGGGAGCGCATTTTCAGCTC TTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGAC GGTGGAGTAC AAGAACATCAGTTTCACGGTGTGGGATGTCGGGGGTCAGGACAAAATTCGACCGCTTTGGCGCCATTATTTCCAGA ] consensusID : consensus_2700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGGCTGGACGCTGCATTTAATCCATCTTTTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGGTTTAATGTCTAGACGGTGGAGGACGAGAACATCTATTTCACGAAGTGGGATGTCGAGGGTCAGGACAAAATTCCACCGCTTTGGCGCCATTATTTGCATAACACACCAGACCTAATCTTTCGCATGGACACGCCTGAC] [+] EMBL CA589804 [CTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAGATGAGGATCCTCATGGTGGGGCTGGACGCTGCATTTAATCCATCTTTTTTGTACAAACTCAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGGTTTAATGTCTAGACGGTGGAGGACGAGAACATCTATTTCACGAAGTGGGATGTCGAGGGTCAGGACAAAATTCCACCGCTTTGGCGCCATTATTTGCATAACACACCAGACCTAATCTTTCGCATGGACACGCCTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2700#0 AAGCGAATCGATTCACTGACGTGACAAATAACTCCAATTTATCAGAAGAGAGAAACGATT 60 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 AGAAGACAAGAGGAAACGTTTGAGTGGCGTGCCTTAAAGATAAACTCTTTTGTTCATTAC 120 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 TGGTTCACTTTTTTTTATTATCTTTATTGGCATATTTTAAAATCATACTAGTTTCCACCG 180 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 ACAGCAGCAATGGGGAGCGCATTTTCAGCTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAG 240 consensus_2700#1 ----------------------------CTCTTTTTAAAGGTTTGTTCGGGAAAAAGGAG 32 ******************************** consensus_2700#0 ATGAGGATCCTCATGGTGGGTCTGGACGCTGCAGGAAAAACTACAATTTTGTACAAACTC 300 consensus_2700#1 ATGAGGATCCTCATGGTGGGGCTGGACGCTGCATTTAATCCATCTTTTTTGTACAAACTC 92 ******************** ************ ** * * ************** consensus_2700#0 AAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGTTTTAATGTCGAGACGGTGGAG 360 consensus_2700#1 AAACTTGGAGAGATTGTGACTACCATTCCCACAATAGGGTTTAATGTCTAGACGGTGGAG 152 ************************************** ********* *********** consensus_2700#0 TACAAGAACATCAGTTTCACGGTGTGGGATGTCGGTGGTCAGGACAAAATTCGACCGCTT 420 consensus_2700#1 GACGAGAACATCTATTTCACGAAGTGGGATGTCGAGGGTCAGGACAAAATTCCACCGCTT 212 ** ******** ******* *********** **************** ******* consensus_2700#0 TGGCGCCATTATTTCCAGAACACACAGGGTCTAATCTTTGTCGTGGACAGCAATGACCGA 480 consensus_2700#1 TGGCGCCATTATTTGCATAACACACCAGACCTAATCTTTCGCATGGACACGCCTGAC--- 269 ************** ** ******* * ********* * ****** **** consensus_2700#0 GAGCGATGTACCGAGGCACGCGAAGAGCTCTCGAGAATGTTGAACGAAGACGAGCTGCGT 540 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 GATGCTGTACTGTTGGTGTTTGCTAATAAACAAGACCTTCCAAATGCGATGAATGCTGCA 600 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 GAAGTCACAGACAAGTTGGGGCTCCATCAACTGCGCAGCAGAAACTGGTACATCCAGGCA 660 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 ACATGTGCCACGTCTGGAGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAATCAGCTC 720 consensus_2700#1 ------------------------------------------------------------ consensus_2700#0 AAGAATAAGTCATAATCACCAACTAAAGTGCTCCACACGATCTATGGCCTAGTTTTCCT 779 consensus_2700#1 ----------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |