These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1108 fasta sequence [CACCGTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA-TTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCTGGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGGAGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAGGAAAAGCAACTAAGGCTGAGCCAGCGCCACTCATTCCACTTCCTCTCCATTCTAAATCTCTTTAAAACGAGCTAACGATGATGTTGACTGTAGGAAAGAATATGCAAGTAATAAAGGGCTGAAAGACATCGGATGATTCATCAATGGAAATTATCTTGAATAGTGGAGTGTAGAGTTACTTCTGGAGCATTCGCATCATTTGACTTGGGCTAATTTCAGATTTCTTTT] [+] EMBL BU805447 [CACCGTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA TTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGNCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCT ] [+] EMBL FR0062447 [ GTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCTCAAACATGGCTTTTAATCAGAATCAGTTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGGCATTTCTGAACGGGGGAGC ] [+] EMBL BU807307 [ TCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA TTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGATAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCT ] [+] EMBL CA590725 [ CAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA TTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGTGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCCGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAGCAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCTGGCAACATGGGCTATCAC ] [+] EMBL FR0062422 [ GCCACAGCAAACGCGAAGAGAGCTGAAGACTCTCAAACATGGCTTTTAATCAGAATCG TGCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAA ] [+] EMBL FR0063774 [ AAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAGGCA TTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAG GCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGGTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGG ] [+] EMBL FR0060135 [ GAGCTGAAGACTCCCATACATGGCTTTTAATCAGAATCA TTCGCGGAACGGTGGCGTTCTGATTAACAACGGCCAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCA ] [+] EMBL FR0059975 [ CA TTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCGAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTNGCCTGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGGGGT GCTTGGAGGG ] [+] EMBL FR0060781 [ TCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAANAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGCGGAAGCTAATTTCAAGATGTCATTTCTG ] [+] EMBL BU806987 [ CCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCTGGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTA ] [+] EMBL CA589800 [ GGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGGAGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAAGAAAAGCAACTAAGGCTGAGCCAGCGCCACTCATTCCACTTCCTCTCCATTCTAAATCTCTTTAAAACGAACTAACGATGATGTTGACTGTAGGAAAGAATATGCAAGTAATAAAGGGCTGAAAGACATCGGATGATTCATCAATGGAAATTATCTTGAATAGTGGAGTGTAGAGTTACTTCTGGAGCATTCGCATCATTTGACTTGGGCTAATTTCAGATTTCTTTT] [+] EMBL FR0055998 [ ATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGGAGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAGGAATAGCAACTAAGGCTGAGCCACCGCCACTCCTTCCACTTCCTCTCCATTCTAAATCTCTTTAATACGAGCTAACGATGAT ] consensusID : consensus_2703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [AGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCATTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCACCTGTGCTTCCCTATCATTTTGTGAAAGGCGGCTGGATTGAGCGGCCTGACTTTGCAGGCCACTGCGTTGCTCGGCCATGGGCGGGCAGCCCTGGGCAGGCCGGGGCCGGGGCGCGG] [+] EMBL CA590209 [AGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCATTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCACCTGTGCTTCCCTATCATTTTGTGAAAGGCGGCTGGATTGAGCGGCCTGACTTTGCAGGCCACTGCGTTGCTCGGCCATGGGCGGGCAGCCCTGGGCAGGCCGGGGCCGGGGCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2703#0 CACCGTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTA 60 consensus_2703#1 --------------------------------AGCTGAAGACTCCCAAACATGGCTTTTA 28 **************************** consensus_2703#0 ATCAGAATCATTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAG 120 consensus_2703#1 ATCAGAATCATTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAG 88 ***************************** ****************************** consensus_2703#0 AGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGG 180 consensus_2703#1 AGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGG 148 ************************************************************ consensus_2703#0 GGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACA 240 consensus_2703#1 GGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACA 208 ************************************************************ consensus_2703#0 CCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTG 300 consensus_2703#1 CCAAGGACTGCCTGGGTTCACCTGTGCTTCCCTATCATTTTGTGAAAGGCGGCTGGATTG 268 ******************** ** ** ******** **** ******** ** * **** consensus_2703#0 AGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTG 360 consensus_2703#1 AGCGGCCTGACTTTGCAGGCCACTGCGTTGCTCGGCCATGGGCGG-GCAGCCCTGGGCAG 327 *** ***** ******** * *** * ** ** *** * * * **** * * * consensus_2703#0 GCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGG 420 consensus_2703#1 GCCGGGGCCGGGGCGCGG------------------------------------------ 345 ** *** *** ** consensus_2703#0 GACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGG 480 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 CTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCC 540 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 CCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTC 600 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 CTGCTGCTGCAGCTGGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACC 660 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 CCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGG 720 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 TCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTG 780 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 AGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGG 840 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 AGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAGGAAAAGCAACTAAGGCTGAG 900 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 CCAGCGCCACTCATTCCACTTCCTCTCCATTCTAAATCTCTTTAAAACGAGCTAACGATG 960 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 ATGTTGACTGTAGGAAAGAATATGCAAGTAATAAAGGGCTGAAAGACATCGGATGATTCA 1020 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 TCAATGGAAATTATCTTGAATAGTGGAGTGTAGAGTTACTTCTGGAGCATTCGCATCATT 1080 consensus_2703#1 ------------------------------------------------------------ consensus_2703#0 TGACTTGGGCTAATTTCAGATTTCTTTT 1108 consensus_2703#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |