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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1108 fasta sequence
[CACCGTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA-TTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCTGGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGGAGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAGGAAAAGCAACTAAGGCTGAGCCAGCGCCACTCATTCCACTTCCTCTCCATTCTAAATCTCTTTAAAACGAGCTAACGATGATGTTGACTGTAGGAAAGAATATGCAAGTAATAAAGGGCTGAAAGACATCGGATGATTCATCAATGGAAATTATCTTGAATAGTGGAGTGTAGAGTTACTTCTGGAGCATTCGCATCATTTGACTTGGGCTAATTTCAGATTTCTTTT]
[+] EMBL BU805447 [CACCGTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA TTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGNCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCT ]
[+] EMBL FR0062447 [ GTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCTCAAACATGGCTTTTAATCAGAATCAGTTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGGCATTTCTGAACGGGGGAGC ]
[+] EMBL BU807307 [ TCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA TTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGATAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCT ]
[+] EMBL CA590725 [ CAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCA TTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGTGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCCGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAGCAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCTGGCAACATGGGCTATCAC ]
[+] EMBL FR0062422 [ GCCACAGCAAACGCGAAGAGAGCTGAAGACTCTCAAACATGGCTTTTAATCAGAATCG TGCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAA ]
[+] EMBL FR0063774 [ AAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTAATCAGAGGCA TTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAGAG GCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGGTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGG ]
[+] EMBL FR0060135 [ GAGCTGAAGACTCCCATACATGGCTTTTAATCAGAATCA TTCGCGGAACGGTGGCGTTCTGATTAACAACGGCCAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCA ]
[+] EMBL FR0059975 [ CA TTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCGAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTNGCCTGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGGGGT GCTTGGAGGG ]
[+] EMBL FR0060781 [ TCTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAANAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGCGGAAGCTAATTTCAAGATGTCATTTCTG ]
[+] EMBL BU806987 [ CCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTGAGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTGGCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGGGACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGGCTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCCCCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTCCTGCTGCTGCAGCTGGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTA ]
[+] EMBL CA589800 [ GGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGGAGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAAGAAAAGCAACTAAGGCTGAGCCAGCGCCACTCATTCCACTTCCTCTCCATTCTAAATCTCTTTAAAACGAACTAACGATGATGTTGACTGTAGGAAAGAATATGCAAGTAATAAAGGGCTGAAAGACATCGGATGATTCATCAATGGAAATTATCTTGAATAGTGGAGTGTAGAGTTACTTCTGGAGCATTCGCATCATTTGACTTGGGCTAATTTCAGATTTCTTTT]
[+] EMBL FR0055998 [ ATCACTATCCAACCACCCCAACAGGAATGTACCCCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGGTCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTGAGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGGAGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAGGAATAGCAACTAAGGCTGAGCCACCGCCACTCCTTCCACTTCCTCTCCATTCTAAATCTCTTTAATACGAGCTAACGATGAT ]
consensusID : consensus_2703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[AGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCATTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCACCTGTGCTTCCCTATCATTTTGTGAAAGGCGGCTGGATTGAGCGGCCTGACTTTGCAGGCCACTGCGTTGCTCGGCCATGGGCGGGCAGCCCTGGGCAGGCCGGGGCCGGGGCGCGG]
[+] EMBL CA590209 [AGCTGAAGACTCCCAAACATGGCTTTTAATCAGAATCATTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAGAGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGGGGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACACCAAGGACTGCCTGGGTTCACCTGTGCTTCCCTATCATTTTGTGAAAGGCGGCTGGATTGAGCGGCCTGACTTTGCAGGCCACTGCGTTGCTCGGCCATGGGCGGGCAGCCCTGGGCAGGCCGGGGCCGGGGCGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2703#0 CACCGTCATCAGGCCACAGCAAACGCGAAGAGAGCTGAAGACTCCCAAACATGGCTTTTA 60
consensus_2703#1 --------------------------------AGCTGAAGACTCCCAAACATGGCTTTTA 28
****************************
consensus_2703#0 ATCAGAATCATTCGCAAAACGGTGGCGTTCTGATTAACAACGGAGAGAGTGTTTTAAGAG 120
consensus_2703#1 ATCAGAATCATTCGCAAAACGGTGGCGTTTTGATTAACAACGGAGAGAGTGTTTTAAGAG 88
***************************** ******************************
consensus_2703#0 AGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGG 180
consensus_2703#1 AGTGCAAGAATGTGGAGCTGTCGTTCAGCGATGTCGCCTGCAAATCCGACCTGCTGAGGG 148
************************************************************
consensus_2703#0 GGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACA 240
consensus_2703#1 GGTCCAAGAAAGGCACTATTTACCTGACACCATACAGGCTGCTGTTTGTGAACAGTAACA 208
************************************************************
consensus_2703#0 CCAAGGACTGCCTGGGTTCAGCTATGTTTCCCTATTATTTGATGAAAGGCTGCAGCATTG 300
consensus_2703#1 CCAAGGACTGCCTGGGTTCACCTGTGCTTCCCTATCATTTTGTGAAAGGCGGCTGGATTG 268
******************** ** ** ******** **** ******** ** * ****
consensus_2703#0 AGCAGCCTGTCTTTGCAGCCAACTACATTAAAGGGACATTGTCAGCAGAGCCTGGTGGTG 360
consensus_2703#1 AGCGGCCTGACTTTGCAGGCCACTGCGTTGCTCGGCCATGGGCGG-GCAGCCCTGGGCAG 327
*** ***** ******** * *** * ** ** *** * * * **** * * *
consensus_2703#0 GCTGGGAGGGGGAAGCTAATTTCAAGATGTCATTTCTGAACGGTGGAGCCATAGAAGTGG 420
consensus_2703#1 GCCGGGGCCGGGGCGCGG------------------------------------------ 345
** *** *** **
consensus_2703#0 GACAGCACCTCTTCAAATTGGCTACAAATGCTTCTCGTGCTGCTCCAGCACAAAACGGGG 480
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 CTTTTGCCTACGGCTATCCTTCCCCTAGTATGATGAACGGCCCACCTCCTGCTGCCCCCC 540
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 CCAGCTATGTCTACCCACCACCTGGTCAACAGAATGGGTTCTACCAGGGTCCTCCTCCTC 600
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 CTGCTGCTGCAGCTGGCAACATGGGCTATCACTATCCAACCACCCCAACAGGAATGTACC 660
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 CCCATGTGGTTGATTACATGGCCCCACCTCCTCCATATCCAGGGCCACCTCCAAACTGGG 720
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 TCGCACCACCCCAGAACTGGACACCAACAGCACCACCTTCAGGTAACTCCAAAGCAGCTG 780
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 AGGCGGCAGGCAGCGCATATTACAACCCCAACAACCCACACAATGTGTATATGCCTATGG 840
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 AGCGGCCTCCACCATACGCACCTCATCCAGACTCTGACAGGAAAAGCAACTAAGGCTGAG 900
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 CCAGCGCCACTCATTCCACTTCCTCTCCATTCTAAATCTCTTTAAAACGAGCTAACGATG 960
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 ATGTTGACTGTAGGAAAGAATATGCAAGTAATAAAGGGCTGAAAGACATCGGATGATTCA 1020
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 TCAATGGAAATTATCTTGAATAGTGGAGTGTAGAGTTACTTCTGGAGCATTCGCATCATT 1080
consensus_2703#1 ------------------------------------------------------------
consensus_2703#0 TGACTTGGGCTAATTTCAGATTTCTTTT 1108
consensus_2703#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |