These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 711 fasta sequence [CAGCGGCTCGCGGTCCCGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGCGGGGGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC-TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC-GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT-TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAG] [+] EMBL BU805386 [CAGCGGCTCGCGGTCCCGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGCGGGGGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCAC ] [+] EMBL BU805635 [ TGTCCTGCGGGGGCTCTTGGTCTCCCGAGGAAAAGGGCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGATACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCC ] [+] EMBL BU806621 [ GGGGGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAGAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCATCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGTCTCGCCAGAGAGGAGATGGACACCCTGATGGAGGA GGGGATACTCTGTGG ] [+] EMBL BU804864 [ GGCTCTTGGACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCATAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAA ] [+] EMBL BU805502 [ ACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGG ] [+] EMBL BU805133 [ ACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGA ] [+] EMBL BU805653 [ ACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGATATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGAC ] [+] EMBL FR0063358 [ CAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTTCGGGGGGGCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGGGAAAAC ] [+] EMBL BU805659 [ GGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAG] [+] EMBL BU805444 [ GGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGT TCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGA ] [+] EMBL FR0063155 [ TCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGAC TGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCACGGGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATG ] [+] EMBL FR0063162 [ GAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACGTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGAATGGG TCGGCAAAGAGGAGATGGACACCCTGGGGGAGGACACCGATACTCTGTGGCTGGATTACC ] [+] EMBL FR0063119 [ GAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACGTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTGCAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCAC GGCGGCTTCAGGACTGTCTGGCCGACATGTACGACCCAGA ] consensusID : consensus_2709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGTCGACATGTACGACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAGCTGAATGTGGA] [+] EMBL BU806800 [GCTTCCTCTTCGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACTGCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGATGGTGGCAAAGTTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCAGCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGTCGACATGTACGACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTGTGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTGACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTTGACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAGATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAGCTGAATGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2709#0 CAGCGGCTCGCGGTCCCGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGCGGGGGCTCTTG 60 consensus_2709#1 ------------------------------------------------------------ consensus_2709#0 GACGCACCAGGGGAAGGTCTCACCTCCTCACCGTCTCTCTCTGCTCCTCTGCTTCCTCTT 120 consensus_2709#1 --------------------------------------------------GCTTCCTCTT 10 ********** consensus_2709#0 CGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACT 180 consensus_2709#1 CGGTGGTCCTCAGAACCTCCACCGCTGCCTGACATGGCTGAGCCGGGGAAAAGCGTGACT 70 ************************************************************ consensus_2709#0 GCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGAAGGTCTTG 240 consensus_2709#1 GCCGGGAAACTGGCCATCAACGTCCAGAAGAGGCTCTCCAGGGCACAGGAGA-------- 122 **************************************************** consensus_2709#0 CAGAAACTTGGCAAAGCCGATGAGACCCGAGACGTTGTGTTTGAGGAGATGGTGGCAAAG 300 consensus_2709#1 -------------------------------------------------TGGTGGCAAAG 133 *********** consensus_2709#0 TTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCA 360 consensus_2709#1 TTCAACAAGCAGATGTCTGAAGGAACCAAACTGCACAAAGACCTGAAAGCTTATATGGCA 193 ************************************************************ consensus_2709#0 GCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGCCGACATGTAC 420 consensus_2709#1 GCAGTGAAAACGATGCACGATGCGTCACGGCGGCTTCAGGACTGTCTGGTCGACATGTAC 253 ************************************************* ********** consensus_2709#0 GACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTG 480 consensus_2709#1 GACCCAGAATGGTTCGGCAAAGAGGAGATGGACACCCTGGTGGAGGACACGGATACTCTG 313 ************************************************************ consensus_2709#0 TGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTG 540 consensus_2709#1 TGGCTGGATTACCATCAGAACATCAATGACAAGTCTCTCAACACCTTGGACACATATGTG 373 ************************************************************ consensus_2709#0 ACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTT 600 consensus_2709#1 ACTCAGTTTCCTGACATTAAGGCCCGTATCGCCAAGCGGGACAGGAAGATGGTGGACTTT 433 ************************************************************ consensus_2709#0 GACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAG 660 consensus_2709#1 GACAGCGCCCGCCATCACTTCGCCTCCTTACAGAAAGGCAAAAAGAAAGACGAGGCCAAG 493 ************************************************************ consensus_2709#0 ATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAG--------- 711 consensus_2709#1 ATCGCCAAGGCAGAGGAGGACCTGGGGCGTGCTCAGAAGATTTTTGAGGAGCTGAATGTG 553 *************************************************** consensus_2709#0 -- consensus_2709#1 GA 555 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |