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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 824 fasta sequence
[CAATGATCTTTCCAGTCGCATGCTCAGGGCGGGAACGGATCATGTCTAGCGATTCTGCTGATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGTGTTCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTCCTGGATGAAGCCGACGAGATGTTGAGCCGAGGGTTCAAAGATCAGATCTACGAGATCTTCCAGAAACTGAGCACGAACATCCAAGTGGGTTTGCTCTCTGCCACCATGCCAGCGGAAGTGTTGGAGGGGGACAAGAAGTTCATGCGGGATCCTGTTCGCATCCTGGGGGAGAAAGAAGAGCTTACCCTGGAAGGGAATCAAGCAGNTCTACTTATTGGNGAACGAAAGGAATGG]
[+] EMBL CA588237 [CAATGATCTTTCCAGTCGCATGCTCAGGACGGGAACGGATCACGTCTAGCGATTCTGCTGATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGTGTTCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTCCTGGATGAAGCCGACGAGATGTTGAGCCGAGGGTTCAAAGATCAGATCTACGAGATCTTCCAGAAACTGAGCACGAACATCCAAGTGGTTTTGCTCTCTGCCACCATGCCAGCGGAAGTGTTGGAGGTGACCAAGAAGTTCATGCGGGATCCTGTTCGCATCCTGGTGAAGAAAGAAGAGCTTACCCTGG AGGGTATCAAGCAGTTC ]
[+] EMBL CA591508 [ CTTAAGGCGGGAACGGATCATGTCTAGCGATTCTGCTGATCCCTACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGTGTTCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTCCTGGATGAAGCCGACGAGATGTTGAGCCGAGGGTTCAAAGATCAGATCTACGAGATCTTCCAGAAACTGAGCACGAACATCCAAGTGGGTTTGCTCTCTGCCACCATGCCAGCGGAAGTGTTGGAGGGGGACCAGAAGTTCATGCGGGATCCTGTTCGCATCCTGGGAGAGAAAGAAGAACTTACCCTGGAAGGGAATCAAGCAGNTCTACTTATTGGNGAACGAAAGGAATGG]
[+] EMBL CA590402 [ ATGTCTAGCGATTCTGCTGATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGTGTTCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTCCTGGATGAAGCCGACGAGATGTTGAGCCGAGGGTTCAAAGATCAGATCTAC ]
[+] EMBL CA589531 [ ATGTCTAGCGATTCTGCTGACTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTG ]
[+] EMBL BU805121 [ TTCTGCTGATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACGCATAGTGGTGGGCACACCGGGCCGTGTGTTCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTCCTGGATGAAGCCGACGAGATGTTGAGCCGAGGGTTCAAAGAT ]
[+] EMBL FR0059358 [ CTCAAAAGACTATGGGGGGCCAGATGGAATGGAGCCTGAGGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGC GGACCAACCTTCG AACGAAATACAGAAACTCAGG ]
[+] EMBL FR0060123 [ CTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTTGCCCTATGGGACTACATG ]
[+] EMBL FR0055764 [ GGGGGCCAGATGGAATGGAGCCTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAAGCCGAAGCTCCACACATAGTGGTGGGCACACCGGGCCGTGTGTTCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTC ]
[+] EMBL FR0061038 [ GGAATTTATCCTGATGNTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGTCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGATCCAGAAAGTCATCCTCGCCCT ]
consensusID : consensus_2713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 788 fasta sequence
[CTCAGGTCGGGAACGGATCATGTCTAGCGATTCTGCTGATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCC-TGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGGTAACCCTGATGCCATGTTGCCACTGTCGGAGGCATAAATGGTGCATTTGAGTACCGACGTTGACTTTAAAAGTTGGTCTAGTCAAATGCTGTCGCTGAGGAGAGTGATATGATGGCACACCATCTTTCGGGACTGACTCTTGCAATGGAGAGCCTATAACCTTCACTGATCACTTAACCTTTTGTGGTAAATCTCCTTTTATGTGGTTGAGTCGCATCGTCCTCAGTCTCCTGCCTCCACCTCCGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGCGTTCGACATGCTCACCAGGGGGCATC]
[+] EMBL CA588307 [CTCAGGTCGGGAACGGATCATGTCTAGCGATTCTGCTGATTACAACATCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCC TGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGGTAACCCTGATGCCATGTTGCCACTGTCGGAGGCATAAATGGTGCATTTGAGTACCGACGTTGACTTTAAAAGTTGGTCTAGTCAAATGCTGTCGCTGAGGAGAGTGATATGATGGCACACCATCTTTCGGGACTGACTCTTGCAATGGAGAGCCTATAACCTTCACTGATCACTTAACCTTTTGTGGTAAATCTCCTTTTATGTGGTTGAGTCGCATCGTCCTCAGTCTCCTGCCTCCACCTCCGCAGATCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCACGCCTGCATCGGCGGGACCAACCTTCGTAACGAAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGCGTTCGACATGCTCACCAGGGGGCATC]
[+] EMBL BU806398 [ TTCTGCTGATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCC TGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTCTGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGGTAACCCTGATGCCATGTTGCCACTGTCGGAGGCATAAATGGTGCATTTGAGTACCGACGTTGACTTTAAAAGTTGGTCTAGTCAAATGCTGTCGCTGAGGAGAGTGATATGATGGCACACCATCTTTCGGGACTGACTCTTGCAATGGAGAGCCTATAACCTTCACTGATCACTTAACCTTTTGTGGTAAATCTCCTTTTATGTGGTTGAGTCGCATCGTCCTCAGTCTCCTGCCTCCACCTC ]
[+] EMBL FR0062665 [ AACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCC TGATATTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGTAAGAGGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGAT ]
[+] EMBL FR0060012 [ AGACCATGGGGGGCCAGAGGGGAGGGAGCC TGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGGCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGCCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGGTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGACC ]
[+] EMBL FR0062074 [ CCATGGGGGGCCAGAGGGAATGGAGCCGTGATGGTATCATCGAGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTCTCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTATTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGGCCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAGGGAGACCCAGACTCTGGGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2713#0 CAATGATCTTTCCAGTCGCATGCTCAGGGCGGGAACGGATCATGTCTAGCGATTCTGCTG 60
consensus_2713#1 ----------------------CTCAGGTCGGGAACGGATCATGTCTAGCGATTCTGCTG 38
****** *******************************
consensus_2713#0 ATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCG 120
consensus_2713#1 ATTACAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTATCATCG 98
************************************************************
consensus_2713#0 AGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTC 180
consensus_2713#1 AGAGCAACTGGACCGAAATTACAGACAATTTTGATGACATGAACCTGAAGGAGAGTCTTC 158
************************************************************
consensus_2713#0 TCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTA 240
consensus_2713#1 TCAGGGGAATATATGCATATGGTTTTGAAAAGCCCTCTGCCATTCAGCAAAGGGCAATTA 218
************************************************************
consensus_2713#0 TTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGG 300
consensus_2713#1 TTCCTTGCATTAAAGGTTATGATGTCATTGCCCAGGCCCAGTCCGGCACTGGCAAGACGG 278
************************************************************
consensus_2713#0 CCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTC 360
consensus_2713#1 CCACGTTTGCCATCTCAATCCTTCAGCAGCTGGAGATTGATCAGAAGGAGACCCAGGCTC 338
************************************************************
consensus_2713#0 TGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGAT--CCAGAAAGTCATCCTCGCCCT 418
consensus_2713#1 TGGTGTTGGCCCCCACCAGAGAACTGGCCCAGCAGGTAACCCTGATGCCATGTTGCCACT 398
*********************************** * ** * * *** * * **
consensus_2713#0 AGGGGACTACATGGGGGCAGCATGCCA-CGCCTGCATCGGCGGGACCAACCTTCGTAACG 477
consensus_2713#1 GTCGGAG-GCATAAATGGTGCATTTGAGTACCGACGTTGACTTTAAAAGTTGGTCTAGTC 457
*** *** * **** * ** * * * * * * **
consensus_2713#0 AAATACAGAAACTCCAGGCCGAGGCTCCACACATAGTGGTGGGCACACCGGGCCGTGTGT 537
consensus_2713#1 AAATGCTG----TC---GCTGAGGAGAGTGATATGATGG----CACACCATCTTTCGGGA 506
**** * * ** ** **** * ** *** ****** * *
consensus_2713#0 TCGACATGCTCACCAGGGGGCATCTGTATTCGAAACTGATCAAGATGTTCGTCCTGGATG 597
consensus_2713#1 CTGACT--CTTGCAATGGAGAGCCTATAACCTTCACTGATCACT-TAACCTTTTGTGGTA 563
*** ** * * ** * ** ** * ******** * * * * *
consensus_2713#0 AAGCCGACGAGATGT---TGAGCCGAGGGTTCAAAGATCAGATCTACGAGATCTTCCAGA 654
consensus_2713#1 AATCTCCTTTTATGTGGTTGAGTCGCATCGTCCTCAGTCTCCTGCCTCCACCTCCGCAGA 623
** * **** **** ** ** ** * ****
consensus_2713#0 AACTGAGCACGAACATC--CAAGTGGGTTTGCTCTCTGCCACCATGCCAGCGGAAGTGTT 712
consensus_2713#1 TCCAGAAAGTCATCCTCGCCCTAGGGGACTACATGGGGGCAGCATGCCA-CGCCTGCATC 682
* ** * * ** * *** * * * ** ******* ** * *
consensus_2713#0 GGAGGGGGACAAGAAGTTCATGCGGGATCCTGTTCGCATCCTGGGGGAGAAAGAAGAGCT 772
consensus_2713#1 GGCGG--GACCA-ACCTTCGTAACGAA----ATACAGAAACTCCAGGCCGAGGCTCCACA 735
** ** *** * * *** * * * * * * ** ** * * *
consensus_2713#0 TACCCTGGAAGGGA-ATCAAGCAGNTCTACTTAT-TGGNGAACGAAAGGAATGG 824
consensus_2713#1 CATAGTGGTGGGCACACCGGGCCGTGCGTTCGACATGCTCACCAGGGGGCATC- 788
* *** ** * * * ** * * * ** * * ** **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |