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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 800 fasta sequence
[TTCCTCTGCTACCGGCGAGAATGAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG-CACAAAAAGCTTCGTGTGG-ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA-GCCATGTCCAGAACATG-ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGGACCCAATTTTTG]
[+] EMBL CA589360 [TTCCTCTGCTACCGGCGAGAATGAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCG ]
[+] EMBL BU805149 [ GAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCATTTCTTGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGG ]
[+] EMBL FR0055212 [ GACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGGCCCAGAACAGTAAAAGTGGATCAA ]
[+] EMBL FR0057383 [ ACATCCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCA ]
[+] EMBL CA330583 [ CCCCGACACCGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATGTATCTTTGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGT ]
[+] EMBL FR0055325 [ CCCCGACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGGCACCACAGTCAAGAA ]
[+] EMBL FR0055906 [ GGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAG CACAAAAAGCTTCGTGTGG ACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCCAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAA ]
[-] EMBL CA332584 [ GAAGCCCCAAAAACGTTCGTGTGGCACAAGTGGTGGGCCAACAGAAAGGAGCTGCTTACAGTTCGCACCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCCCTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTC ]
[+] EMBL CA329900 [ CCATCTGCA GCCATGTCCAGAACATG ATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGCTGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCAGGAAGTTCTTGGACGGTATTTATGTATCTGAGAAGGGAACTGTTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAA ]
[+] EMBL CA330198 [ TTGTGGACCCAGAACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTCCAA ]
[+] EMBL CA845159 [ GCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTT ]
[+] EMBL FR0056149 [ ACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGACCAATAAAATGACAGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGGACCCAATTTTTG]
consensusID : consensus_2717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[AGGTATTGAACTATAGTCTGCATCACTCACTTATAAGAGACTCATAGTGTGACAGATCAGTTGTGGTGATCAGAGGCCAAAAGGTGTCTCAAAGATTTTAAGGTCTCAGATGTTCTCATTGATGCTGGGACAGAAGTTCTGTTCTGACTTTCCCATCAACTTGCAATGAAGTGTGACAGGTGAAGCTGAAAACTTAATTGCATGAAAATGGTAATTTAAAATGTGGTGTAGATTTAAGATAAATGCTTTTACACCAGGACCTCCGTTTATGAATTTCTGGAGATCGAGGATGGAGATTTGTGGGATTGTAGCAGTCATGCTTTCACCAGTATTCTATTTAGTTTGTTTTCTCGATAAGATGTCTCTTGTTTAGGTTCTGAATTTCTGATGCATATGTTTTAATCTTTGCGTTGATTGTCCTGCCTGAGATTACGTCTTTGTCTCAAACTTGTTTTTCTTCCTTTTTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGGCCAATAAAATGACAGATTTTTC]
[-] EMBL CA332008 [AGGTATTGAACTATAGTCTGCATCACTCACTTATAAGAGACTCATAGTGTGACAGATCAGTTGTGGTGATCAGAGGCCAAAAGGTGTCTCAAAGATTTTAAGGTCTCAGATGTTCTCATTGATGCTGGGACAGAAGTTCTGTTCTGACTTTCCCATCAACTTGCAATGAAGTGTGACAGGTGAAGCTGAAAACTTAATTGCATGAAAATGGTAATTTAAAATGTGGTGTAGATTTAAGATAAATGCTTTTACACCAGGACCTCCGTTTATGAATTTCTGGAGATCGAGGATGGAGATTTGTGGGATTGTAGCAGTCATGCTTTCACCAGTATTCTATTTAGTTTGTTTTCTCGATAAGATGTCTCTTGTTTAGGTTCTGAATTTCTGATGCATATGTTTTAATCTTTGCGTTGATTGTCCTGCCTGAGATTACGTCTTTGTCTCAAACTTGTTTTTCTTCCTTTTTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAGGAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTCCCAGTTTGGCCAATAAAATGACAGATTTTTC]
consensusID : consensus_2717#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[AAAGGTTGGTTTGATTTTCGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAAAGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCAGCCATGTCCAGAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAAGATGAGCTGATCCTTGAGGGTAACGACATTGANCTGGTGT]
[+] EMBL FR0055903 [AAAGGTTGGTTTGATTTTCGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAACTCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAAAGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCTACAGTTCGCACCATCTGCAGCCATGTCCAGAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGCGCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAGAAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGAACTGTGCCGTATCTGCAGCCCAAAAAGATGAGCTGATCCTTGAGGGTAACGACATTGANCTGGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2717#0 TTCCTCTGCTACCGGCGAGAATGAAGACTATTCTCAGCAGTCAGACTGTCGACATCCCCG 60
consensus_2717#2 -------------------------------------------AAAGGTTGGTTTGATTT 17
consensus_2717#1 ------------------------------------------------------------
consensus_2717#0 ACAAAGTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAAC 120
consensus_2717#2 TC---GTCGAGGTGAGGCTGAAGGGGCGTACGGTCATCGTCAAGGGGCCCCGCGGGAAAC 74
consensus_2717#1 ------------------------------------------------------------
consensus_2717#0 TCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAA 180
consensus_2717#2 TCGTCAGGGAGTTCAACCACATCAACCTGGAGCTTTGCCTTCTGGGCAAGAAGCACAAAA 134
consensus_2717#1 ------AGGTATTGAACTAT---AGTCTGCATCACTCACTTAT----AAGAGACTCATAG 47
** ** *** * * *** * * * *** * **** * ** *
consensus_2717#0 AGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCT-ACAGTTCGCACCATC 239
consensus_2717#2 AGCTTCGTGTGGACAAGTGGTGGGGCAACAGAAAGGAGCTGGCT-ACAGTTCGCACCATC 193
consensus_2717#1 TGTGACAGATCAGTT-GTGGTGAT-CAGAGGCCAAAAGGTGTCTCAAAGATTTTAAGGTC 105
* * * ****** ** * * ** ** ** * ** * * **
consensus_2717#0 TGCAGCCATGTCCA--GAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGC 297
consensus_2717#2 TGCAGCCATGTCCA--GAACATGATCAAGGGAGTCACTTTGGGTTTCCGCTACAAAATGC 251
consensus_2717#1 T-CAGATGTTCTCATTGATGCTGGGACAGAAGTTCTGTTCTGACTTTCCCATCAACTTGC 164
* *** * ** ** ** ** ** ** * ** * * *** ***
consensus_2717#0 GCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAG 357
consensus_2717#2 GCTCCGTGTATGCCCATTTCCCCATCAATGTTGTCATCCAGGAAAATGGAAGTATAGTAG 311
consensus_2717#1 AATGAA-GTGTGACAGGTGAAGC-TGAAAACTTAATTGCATGAAAATGGTAATTTAAAAT 222
* ** ** * * * * ** * * ** ******** * * ** *
consensus_2717#0 AAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGA 417
consensus_2717#2 AAATCAGGAACTTTCTGGGAGAGAAGTACATCCGCCGTGTCCGAATGAGGCAGGGTGTGA 371
consensus_2717#1 GTGGTGTAGATTT---AAGATAAATGCTTTTACACCAGGACCT-------CCGTTTATGA 272
* ** ** * * * * * ** * ** * * * ***
consensus_2717#0 ACTGTGCCGTATCTGCAGCCCAAAAGGATGAGCTGATCCTTGAGGGTAACGACATTGAGC 477
consensus_2717#2 ACTGTGCCGTATCTGCAGCCCAAAAAGATGAGCTGATCCTTGAGGGTAACGACATTGANC 431
consensus_2717#1 ATTTCTGGAGATC----GAGGATGGAGATTTGTGGGATTGTAGCAGTCATGC--TTTCAC 326
* * *** * * *** * * * ** * * ** *
consensus_2717#0 TGGTGTCGAACTCAGCTGCTCTTATCCAACAGGCCACCACAGTCAAAAATAAGGATATCA 537
consensus_2717#2 TGGTGT------------------------------------------------------ 437
consensus_2717#1 CAGTATTCTATTTAGTTTGTTTTCTCGATAAGATGTCTCTTGTTTAGGTTCTGAATTTCT 386
** *
consensus_2717#0 GGAAGTTCTTGGACGGTATTTATGTA------TCTGAGAAGGGAACTGTTGTGGACCCAG 591
consensus_2717#2 ------------------------------------------------------------
consensus_2717#1 GATGCATATGTTTTAATCTTTGCGTTGATTGTCCTGCCTGAGATTACGTCTTTGTCTCAA 446
consensus_2717#0 AACAGTAAAAGTGCATCAACACTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAG 651
consensus_2717#2 ------------------------------------------------------------
consensus_2717#1 ACTTGT---TTTTCTTCCTTTTTCGCAGCCACGATCCAACCGGCCACGTTGGTTAGAGAG 503
consensus_2717#0 GAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTC 711
consensus_2717#2 ------------------------------------------------------------
consensus_2717#1 GAGCGGATTACATCCAGACGACTATTGTAGTAAAGACGTTGAATAGATGTATCCCATGTC 563
consensus_2717#0 CCAGTTTGACCAATAAAATGACAGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACC 771
consensus_2717#2 ------------------------------------------------------------
consensus_2717#1 CCAGTTTGGCCAATAAAATGACAGATTTTTC----------------------------- 594
consensus_2717#0 CCCGGGGGGGGCCCGGGACCCAATTTTTG 800
consensus_2717#2 -----------------------------
consensus_2717#1 -----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |