These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence [CCAAACGGGGGGGAACATAGAGGCGAAACCATGGCGAAGACGGGGGTCGCGGACTCAAAGATAGCGGCCATCGAACCGCTCGGTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGATGCTGAAAACAGGGGCCCCCGACGCCGGCAGTAGAATCCAGATAGCTGAGCTGGGCCTGGGAATGATCAAAGATCTGACAACCAACGTGCTCACGGGTCTGGGAGCACCTGAAGCTCCACAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCCCCGAGCCACCGGAGAAGGACGACCGGCGTGACGAGAGCTCCAGGACGGCGGCGTCCCTGAGGAGCACGGTGTCCAAGATGTCCGAGAGTCTCCACAGTGAAATCCGAAACGTG] [+] EMBL CA590576 [CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCT GGAGCACCTGAAGCTCCACAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCCCCGAGCCACCGGAGAAGGACGACCGGCGTGACGAGAGCTCCAGGACGGCGGCGTCCCTGAGGAGCACGGTGTCCAAGATGTCCGAGAGTCTCCACAGTGAAATCCGAAACGTG] [+] EMBL FR0060451 [ aGGGGGAACATAGAGGCGAAACCATGGCGCACACGGGGGTCGCGGACTCAAAGATAGCGGTCATCGAACCGCTCGGTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGTGGATGCTGAAAACAGGGGCCCCCGACGCCGGCAGTAGAATCCAGATAGCTGAGCTGTGCCTGGGAATGATCAAAGATCTGACATCCAATGTGCTCACGGGTCTGGGAGCA ] consensusID : consensus_2719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 588 fasta sequence [ACGCAGCGTCAGATCCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG-AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC-TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCC] [+] EMBL CA590507 [ACGCAGCGTCAGATCCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCCCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATG ] [+] EMBL CA590644 [ CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCC] [+] EMBL CA590342 [ CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCCCTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTC ] [+] EMBL CA333146 [ CCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACG ] [+] EMBL FR0060342 [ GCGAAACCATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCG ] [+] EMBL FR0060808 [ ATGGCGATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGGACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGANGGCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGGG ] [+] EMBL FR0060132 [ ATGACGTGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCCCCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGGCATCACTCAGATTTCTCACCAGACGNTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCC ] [+] EMBL FR0060236 [ TGGTTCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCCTTTCCCCGATA ] [+] EMBL FR0060899 [ AAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGAGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGGCCAGTCCAAATGTCTGACGACGCTGAACACCAGGGAGGGGGCG ] [+] EMBL FR0060931 [ AAAGAGAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGG ] [+] EMBL BU807583 [ ATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATTAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCACCTGTTAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCTCCAGACGTTGTCC TTCCCCGATAGGATGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAATCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTCAACGCCATGGTCACGCACG ] [+] EMBL FR0060105 [ ATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGAGCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGATCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGGAGCCCCTG AAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATCACTCAGATTTCTCACCAGACGTTGCCC TTCCCCGATAGGAAGGACAGCGTCCAGTCCAAATGTCTGACGACGCTGATCACCAAGGAGGTGGCGGAGAGCATCACGTCTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2719#0 --------------CCAAACGGGGGGGAACATAGAGGCGAAACCATGGCGAAGACGGGGG 46 consensus_2719#1 ACGCAGCGTCAGATCCAAACGGACCAGAACATAGAGGCGAAACCATGGCGATGACGTGGT 60 ******** ************************* **** ** consensus_2719#0 TCGCGGACTCAAAGATAGCGGCCATCGAACCGCTCGGTAATCACTTTTGTGAACGGATGA 106 consensus_2719#1 TCGCGGACTCAAAGATAGCGTCCATCGAACCGCTCGTTAATCACTTTTGTGAACGGATGA 120 ******************** *************** *********************** consensus_2719#0 GCGAGGAACAGTGGCGGATGCTGAAAACAGGGGCCCCCGACGCCGGCAGTAGAATCCAGA 166 consensus_2719#1 GCGAGGAACAGTGGCGGCTGCTGAAATCAGGGGCCCCCGACGCCGCCAGTAGAATCCAGA 180 ***************** ******** ****************** ************** consensus_2719#0 TAGCTGAGCTGGGCCTGGGAATGATCAAAGATCTGACAACCAACGTGCTCACGGGTCTGG 226 consensus_2719#1 TCGCTGAGCTGGTCCTGGGAATGATCAAAGTTCTGACAACCAACGTGCTCACGGCTCTGG 240 * ********** ***************** *********************** ***** consensus_2719#0 GAGCACCTGAAGCTCCACAGG--------------------------------------- 247 consensus_2719#1 -AGCACCTGAAGCTCCACAGGTCCGAGGAGGAACTCTTGGACAGCCTGAATGAGGTCATC 299 ******************** consensus_2719#0 ---------------------------------------ATGGACAGCGTCCAGTCCAAA 268 consensus_2719#1 ACTCAGATTTCTCACCAGACGTTGTCCTTCCCCGATAGGATGGACAGCGTCCAGTCCAAA 359 ********************* consensus_2719#0 TGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAA 328 consensus_2719#1 TGTCTGACGACGCTGATCACCAAGGAGGTGTCGGAGAGCATCACGTCTTCTCTCTGTGAA 419 ************************************************************ consensus_2719#0 TCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTC 388 consensus_2719#1 TCCAGCTCCTCCTCGTCTTTGCTGGAACTCAAGCACCGCATCGTCAACCCCTACAGGCTC 479 ************************************************************ consensus_2719#0 AACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCC 448 consensus_2719#1 AACGCCATGGTCACGCACGCCGCCAACATGTTCAACAACATGAAGATCAAGATGAAAGCC 539 ************************************************************ consensus_2719#0 CTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCCCCGAGCCACCG 508 consensus_2719#1 CTGTTTCTGCGGCGGCGGCTCGTCCGCCTGAGCGACGGCCAAGACGTCC----------- 588 ************************************************* consensus_2719#0 GAGAAGGACGACCGGCGTGACGAGAGCTCCAGGACGGCGGCGTCCCTGAGGAGCACGGTG 568 consensus_2719#1 ------------------------------------------------------------ consensus_2719#0 TCCAAGATGTCCGAGAGTCTCCACAGTGAAATCCGAAACGTG 610 consensus_2719#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |