These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 460 fasta sequence [GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG-CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA-AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAATGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT] [+] EMBL CA330966 [GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTG ] [+] EMBL CA330241 [ GAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCT ] [+] EMBL CA845199 [ AACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC ] [+] EMBL CA330792 [ AACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC ] [+] EMBL FR0055539 [ GTCGTGCCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGTGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGTAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACACTGTAGAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAATGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT] [+] EMBL CA845626 [ GTGCCAAGAAGGGCCGTGGCCACGTGCAGCCCCCTCCTCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAA ] [+] EMBL FR0055853 [ CAATGAAGGGCCGTGGCAACTTGCAG CCCATCGGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAGAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACGCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCCTGACTAAGAAC ] [+] EMBL CA333360 [ CCAAGAAGGGCCGTGGCCACGTGCAG CCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCA AGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTT ] consensusID : consensus_2726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 403 fasta sequence [TGGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAAGAGACACAGAAAAAACCCCCGGGGGGGGCCCCGTTCCCCATTTTT] [+] EMBL FR0056348 [TGGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAAAAGCCAAAAAAAAAACCCCCGGGGGGGGCCCCGTTCCCCATTTTT] [+] EMBL FR0056891 [ GGCCACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAGGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAGAAGGAGACGCGGg ] [+] EMBL FR0055931 [ ACGTGCAGCCCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAATAAAAACAGATA ] [+] EMBL CA330602 [ ACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTATTGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGAGGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTG ] [+] EMBL FR0057527 [ AGTTTGTGATCAGGAACATCGTGGTGGCAGCGGCTGTGAGAGACATCTCGGAGGCCATTGTCTTTGACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCAT ] [+] EMBL CA330680 [ GGAAAGACCGCACGCCACCCCCGAGGTTTAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC ] [+] EMBL CA845592 [ CCCGAGCTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTTAAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2726#0 GCACGAGCAAGAAAAGGAGGAATAACGGTCGTGCCAAGAAGGGCCGTGGCCACGTGCAGC 60 consensus_2726#1 ----------------------------------------------TGGCCACGTGCAGC 14 ************** consensus_2726#0 CCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTG 120 consensus_2726#1 CCATCCGCTGCACCAACTGTGCCCGTTGTGTCCCCAAGGACAAGGCCATCAAGAAGTTTG 74 ************************************************************ consensus_2726#0 TGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTG 180 consensus_2726#1 TGATCAGGAACATCGTGGAGGCAGCGGCTGTGAGAGACATCTCGGAGGCCAGTGTCTTTG 134 ************************************************************ consensus_2726#0 ACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCC 240 consensus_2726#1 ACTCGTATGTGCTGCCCAAGCTCTACGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCC 194 ************************************************************ consensus_2726#0 ACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGA 300 consensus_2726#1 ACAGTAAGGTGGTGAGGAACCGCTCTTGTGAGGCCAGGAAAGACCGCACGCCACCCCCGA 254 ************************************************************ consensus_2726#0 GGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTT 360 consensus_2726#1 GGTTCAGGCCTGCTGCTGGTGCGCCAAGACCTCCTCCAAAGACAATGTAAAGCAGAATTT 314 ************************************************************ consensus_2726#0 AAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAACTTTTGTGATTCCTAAA 420 consensus_2726#1 AAAGATGCTGTTCACCTGAATAAATTCCTGTCTTGACTAAAAAA----GAGACACAGAAA 370 ******************************************* * ** * *** consensus_2726#0 TGTGTCAAAAGATTCGACAGACCTGTCAAGTATTTTTATT 460 consensus_2726#1 AAACCCCCGGG----GGGGGCCCCGTTCCCCATTTTT--- 403 * * * * ** ** ****** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |