These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 669 fasta sequence [ACTCAGGCCGCTGCCCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTCGGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCATGAATGGTTGGCAAGCCTG] [+] EMBL BU805547 [ACTCAGGCCGCTGCCCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGG ] [+] EMBL BU805509 [ CCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTCNGAGAGTATGCTGCGCAAAGCGAGGAGCCGCAC ] [+] EMBL FR0063644 [ CCGCAGATTTCTTTGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGAGGGAGGTCGCCAACAAAGGTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGACAACTATTTCCTGGCGGGCCCCTACGGGGAGAGCAACGTGCGCACTCAGGGGGAG ] [+] EMBL FR0061859 [ GATTTCTTTGTTTGGGTTGGCTCCGAGAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGCACGAGGTGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTAT ] [+] EMBL BU804692 [ TGTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGGAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGA ] [+] EMBL CA591319 [ GTTTGGGTTGGCTCCGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTG ] [+] EMBL FR0063131 [ GTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTCTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGgga ] [+] EMBL BU805440 [ TTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTCGGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCATGAATGGTTGGCAAGCCTG] [+] EMBL FR0063425 [ CATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGG ] [+] EMBL FR0063878 [ AACGCTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGNGNGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACC ] [+] EMBL BU805190 [ GGTGAAAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTTCTGACAGCGTGGCTGCTCGGAGAGTATGCTGCGCAAAGCGAGGAG ] consensusID : consensus_2728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 656 fasta sequence [CTGGGGAAACTGTCTTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCGTAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC-GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCCTGAGTGGTTG] [+] EMBL BU804779 [CTGGGGAAACTGTCTTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCGTAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCCTGAGTGGTTG] [+] EMBL BU804670 [CTGGGGAAACTGTCTTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCGTAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCACTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTG ] [+] EMBL BU804834 [ GCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTTGATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAAGTGGAGGCATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGG ] [+] EMBL FR0063665 [ ACTATTTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGAGCGAGCCCCCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTACTTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACCGCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCGTGGTTTGACCGTGAGGCCAATGACGCCGGGCTATTTGGCTTCCTGACAGCGTGGCTGCTCGGGAGAGTATtgct ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2728#0 ACTCAGGCCGCTGCCCCCTTCTCACTCCTTCTCCGCAGATTTCTTTGTTTGGGTTGGCTC 60 consensus_2728#1 -CTGGGGAAACTGTC---TTGAAGCACCACCTGGGAGTTTGGTTTTAGGAAGAGCAGCCG 56 ** ** *** * ** * ** ** * * *** * ** consensus_2728#0 CGACAGCTGTTGGTGTGCACTTCATCTCGGGAAAGTTAAGAAAACGCTGAAAGCATGCCA 120 consensus_2728#1 TAGGGCGACCCGGTGCGTGCCGCGCGATCCCGATCCCCGCTGATTCCGGACAGCATGCCA 116 **** * * * * * * ** ********* consensus_2728#0 CTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTT 180 consensus_2728#1 CTGGCCCGCAGCCTGTCCGTCACGTCCCTCTCAGGCCTGGAGGAGTGGGACGAGGAGTTT 176 ************************************************************ consensus_2728#0 GATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGC 240 consensus_2728#1 GATTTAGAAGACGCCGTTCTCTTTGAAATTGCGTGGGAGGTCGCCAACAAAGTTGGAGGC 236 ************************************************************ consensus_2728#0 ATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTAT 300 consensus_2728#1 ATCTACACCGTCATCCAGACGAAAGCTCGCCTGACCGCCGAGGAATGGGGGGAGAACTAT 296 ************************************************************ consensus_2728#0 TTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCC 360 consensus_2728#1 TTCCTGGTGGGCCCCTACGTGGAGAGCAACGTGCGCACTCAGGTGGAGCTGATCGAGCCC 356 ************************************************************ consensus_2728#0 CCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTAC 420 consensus_2728#1 CCGACCCCTATACTGAGGAGAACCATTGACAAGATGAACTCCAGAGGGTGTAAGATCTAC 416 ************************************************************ consensus_2728#0 TTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACC 480 consensus_2728#1 TTTGGGAGGTGGCTGATAGAGGGCAGCCCTTACGTTATTCTGATAGACGTTGGGTTCACC 476 ************************************************************ consensus_2728#0 GCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCG 540 consensus_2728#1 GCCTGGTCTCTGGACACCTGGAAGAGCGAGCTGTGGGACATCAGTGGCATTGGTGTGCCG 536 ************************************************************ consensus_2728#0 TGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC 600 consensus_2728#1 TGGTTTGACCGTGAGGCCAATGACGCCGTGCTATTTGGCTTCCTGACAGCGTGGCTGCTC 596 ************************************************************ consensus_2728#0 GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCATGAATGGTTG 660 consensus_2728#1 GGAGAGTATGCTGCGCAAAGCGAGGAGCCGCACATTGTGGCTCATTTCCCTGAGTGGTTG 656 ************************************************* *** ****** consensus_2728#0 GCAAGCCTG 669 consensus_2728#1 --------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |