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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 498 fasta sequence
[CTTCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTCAAAAAAAAAAAAAA]
[+] EMBL AB089821 [CTTCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTACAACCATGTCCGTCACTGTCTTGGAGAATGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTCAAAAAAAAAAAAAA]
[+] EMBL AB089820 [CTTCTGCTTGCAGTCTAGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTCCAAAAAAAAAAAAAA]
[+] EMBL BU805728 [ TCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCAAGACGGTAACTTTGTCGTCTACCGCACTGAGCCCATGTGGGCTTCAGACACTTTCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCAGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGCAGCTGGTGCTGAAGAAGGATGGCCAGGAGATTTGGAACTCTGACCACGATCATGGCATGAAGTGATGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTCACAA ]
[+] EMBL CA589181 [ TCTGCTTGCAGTCTAGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAA ]
[+] EMBL CA591190 [ TCTGCTTGCAGTCTAGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAA ]
[+] EMBL CA844796 [ gcacGAGTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCAAGACGGTAACTTTGTCGTCTACCGCACTGAGCCCATGTGGGCTTCAGACACTTTCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCTTTCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCAGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGCAGCTGGTGCTGAAGAAGGATGGCCAGGAGATTTGGAACTCTGACCACGATCATGGCATGAAGTGATGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAA ]
[+] EMBL CA845036 [ TTTGGGTGCTACACTAAAGCTACAACCATGTCCGTCACAGTCTTGGAGAATGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAA ]
[+] EMBL FR0061168 [ TAACCATGCCCATCAATGTCTTATAGAAAGGCTCTGAGCTCAAGAGGGGAGAGTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGCCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGGGACGCATTTGAAAGCCAAACTCT ]
[-] EMBL CA332650 [ AACCATGTCCATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCGTCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACC ]
[+] EMBL CA589437 [ CATCAATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACTTTGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCGTCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTTAAAA ]
[-] EMBL CA332422 [ AATGTCTTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAGACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAGCTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAG ]
[+] EMBL CA847100 [ cTTACAAGGAGAATGGNTCTGAGCTCAAGAGGGGAGATCTTGTGATAGCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCAGTT ]
[+] EMBL FR0056873 [ TCTTGGAGAATGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCCAGTGGATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCTTCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCCGCAACACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGAAGAAGGATTGCCAGCAGCTCTGGAACTCCGATCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTTATCACTGGGCGT ]
consensusID : consensus_2731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence
[CTCCTCTTGGTCTGATCAGGGTGCAGCAGTCAAGCCTAATTATGAGCAGGAAGATCATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGGAAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCGTCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGATAACAAGCCCCGCTGGCACACAAACACACACAGTCCAAGCAGTTCGACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATGATTTGGAGCTCCGATGTCGACCATGGTTCTAAATAATGCTTTTCAAACATCCGAAGTTCCTGATGAACTGGGATCAAAT]
[+] EMBL CA588958 [CTCCTCTTGGTCTGATCAGGGTGCAGCAGTCAAGCCTAATTATGAGCAGGAAGATCATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGGAAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCGTCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGATAACAAGCCCCGCTGGCACATAAACACACACAGTCCAAGCAGTTCGACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATGATTTGGAGCTCCGATGTCGACCATGGTTCTAAATAATGCTTTTCAAACATCCGAAGTTCCTGATGAACTGGGATCAAAT]
[+] EMBL FR0058682 [ GCAGGAAGATCATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGGAAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCGTCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTCATGTACAATGATGATAACAAGCCCCGCTGGCACACAAACACACACAGTCCAAGCAGTTCGACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATGATTTGGAGCTCCGATGTCGACCATTGTTCTAAATAATGCTTTTCAAACATCCGAAGTTCCTGATGAACTt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2731#0 CTTCTGCTTGCAGTCTGGTTTGGGTGCTACACTAAAGCTATAACCATGTCCATCAATGTC 60
consensus_2731#1 ---CTCCTCTTGGTCTGATCAGGGTGCAGCAGTCAAGCC-TAATTATGAGCAGGAAGATC 56
** ** ***** * ****** ** * **** *** *** ** ** **
consensus_2731#0 TTAGAGAAAGGCTCTGAGCTCAAGAGGGGAGACTCTGTGTTATCCAAAAACAGCAAGTGG 120
consensus_2731#1 ATCTCCAAAGGTGAGAAGCTCCTCAAAGGAGACTGCCTTGTATCCGAAAATGGAAATTGG 116
* ***** ***** * ******* * ***** **** * ** ***
consensus_2731#0 ATTGCTCTCTTTCAGCATGACGGTAACTTTGTCGTCTACCGCACTGAGCCCGTGTGGGCT 180
consensus_2731#1 AAAGTGATTTTCCAGCACGACGGCAACTTTGTCATCTATGGCTGGGATGCCAAGTGGGCG 176
* * * ** ***** ***** ********* **** ** ** ** ******
consensus_2731#0 TCAGACACTTCCGGCATGGATCCAACCCGCCTGTGCATGCAAGGAGACTGCAACCTGGTC 240
consensus_2731#1 TCAAACACTTGGAAATCAGATGCAACGCGCCTGTGCATGCAAGAAGACTGCAACCTGGTC 236
*** ****** *** **** **************** ****************
consensus_2731#0 ATGTACAATGATGAGGACAAGCCCCGCTGGCACACAAACACCTCCAAAGGCGGCTGCAAG 300
consensus_2731#1 ATGTACAATGATGATAACAAGCCCCGCTGGCACACAAACACACACAGTCCAAGCAGTTCG 296
************** ************************* ** ** * *
consensus_2731#0 ACCTGTGTCCTTTCACTGACTGACGAAGGGAAGCTGGTGCTGGAGAAGGATGGCCACCAG 360
consensus_2731#1 ACGTGTTCTCTTACCCTGACCAACGAGGGCAGACTGGAACTGCAGAAAGACGGCAAAATG 356
** *** *** * ***** **** ** * **** *** **** ** *** * *
consensus_2731#0 CTCTGGAACTCCGACCGCGATCATGGCATGAAGTGACGCATTTGAAAGCCAAACTCTCAT 420
consensus_2731#1 ATTTGGAGCTCCGATGTCGACCATGGTTCTAAATAATGCTTTTCAAA------------- 403
* **** ****** *** ***** ** * * ** *** ***
consensus_2731#0 CACTGGGCGTTTCCAACCCTGTCCTGTAAACTGGGTTCAAATAAAAGAAATGTTTCACCA 480
consensus_2731#1 CATCCGAAGTTCCTGA----------TGAACTGGGATCAAAT------------------ 435
** * *** * * * ******* ******
consensus_2731#0 GTTCAAAAAAAAAAAAAA 498
consensus_2731#1 ------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |