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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 381 fasta sequence
[GCAGATTATCCAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA-ATAAAGCTATGCTTTGTTGACTCAAAAAAAAAAA----AGAAAAAGGAAACCCCGGGGGGGGCCCGGGACCCAATTTTTGGCCCCCTTTAAGGGGGGGTGGGGGGGGGCGGGCGGGAGGGGGGGGGGG]
[+] EMBL CA846643 [GCAGATTATCCAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCAAA ]
[+] EMBL FR0058042 [ CAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCANAAAAAAAAA AAAAAA ]
[+] EMBL CA846773 [ GCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCNNAA ]
[+] EMBL CA846639 [ GCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCNAAAAA ]
[+] EMBL FR0056203 [ CAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAGCAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAATAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCATAA ATAAAGCTATGCTTTGTTGACTC AAAAT AGAGAGAGGAATCCCCAGGGGGGGCCCGGagg ]
[+] EMBL CA845333 [ TGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCNAAAAAAAAAA A ]
[+] EMBL CA846627 [ CAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCAAAAAAAAAAA ]
[+] EMBL FR0057653 [ CCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCTGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCAAAAGGGAAGA GAGAAAA AAACCCCGGGGGGGGCCCGGGACCCAATTTTTGGCC ]
[+] EMBL FR0057635 [ CACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCTGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCAAAAGAAAGAAGGAGAGAAAAAAAAACCCCGGGGGGGGGCCCGGGACCCAATTTTTGGCCCCCTTTAAGGGGGGGTGGGGGGGGGCGGGCGGGAGGGGGGGGGGG]
[+] EMBL FR0056411 [ CACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAACAAGCACACCAAGAAAGGCCACAAGGCGATACGGTAGGCGGCAACTCAGGCTATGTAGCACGCCTTTAC ]
[+] EMBL CA844788 [ TAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCATAATATAAAGCTATGCTTTGTTGACTCNNAAAAAAA ]
[+] EMBL CA330388 [ TAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGACTCNNAAA ]
[+] EMBL CA844777 [ CGCTACGAGTCACTGAAGGGGG TGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAA AAACACAACAAGAAAGG CAGAAGG GAT CGGAAGGCGG AGCTCA GCGAAATA AAACCTTTCCGTCACATTGTTTTGTTTCCACTGTAGAA ATAA GTATGCTTTGTTGACTCAA ]
[+] EMBL CA845182 [ CTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAA ATAAAGCTATGCTTTGTTGAC ]
consensusID : consensus_2743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[GTTCGTGTGGCAGATTATCCAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTACGATACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGTAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAATTGNTTTGTTTCCACTGAACCCCCGGGGGGTATCCGGGACCCACCTTTTGGCCC]
[+] EMBL FR0055520 [GTTCGTGTGGCAGATTATCCAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTACGATACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGTAGCTCAGGCGAAATAAGAAGCCTTTCCGTCACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAATTGNTTTGTTTCCACTGAACCCCCGGGGGGTATCCGGGACCCACCTTTTGGCCC]
consensusID : consensus_2743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[TGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCTGTCACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAAATAAAAAAAAAGCAAAAAAATTGGAAAGACCTCAAAAAAAAAACCCCCGGGGGGGCGC]
[+] EMBL FR0055174 [TGGCCAAGTCCAAGAACCACACGAGTCACAACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGTCACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACAAGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCTGTCACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAAATAAAAAAAAAGCAAAAAAATTGGAAAGACCTCAAAAAAAAAACCCCCGGGGGGGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2743#0 ---------GCAGATTATCCAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACA 51
consensus_2743#1 GTTCGTGTGGCAGATTATCCAGTGCAGAAATGGCCAAGTCCAAGAACCACACGAGTCACA 60
consensus_2743#2 ------------------------------TGGCCAAGTCCAAGAACCACACGAGTCACA 30
******************************
consensus_2743#0 ACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGT 111
consensus_2743#1 ACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGT 120
consensus_2743#2 ACCAGTCTCGTAAAGCCCACAGAAATGGCATCAAGAGGCCCAAGTCTAATCGCTACGAGT 90
************************************************************
consensus_2743#0 CACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACA 171
consensus_2743#1 CACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTACGATACACAACA 180
consensus_2743#2 CACTGAAGGGGGTTGACTCCAAATTCCTGAGGAACATGCGCTTTGCTAAGAAACACAACA 150
************************************************ ** ********
consensus_2743#0 AGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCCGT 231
consensus_2743#1 AGAAAGGCCAGAAGGCGATACGGAAGGCGGTAGCTCAGGCGAAATAAGAAGCCTTTCCGT 240
consensus_2743#2 AGAAAGGCCAGAAGGCGATACGGAAGGCGGCAGCTCAGGCGAAATAAGAAGCCTTTCTGT 210
****************************** ************************** **
consensus_2743#0 CACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAAAAAAAAAA 291
consensus_2743#1 CACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAATTGNTTTG 300
consensus_2743#2 CACATTGTTTTGTTTCCACTGCAGAAATAAAGCTATGCTTTGTTGACTCAAAATAAAAAA 270
****************************************************
consensus_2743#0 AGAAAAAGGAAACCCCGGGGGGGGCCCGGGACCCAATTTTTGGCCCCCTTTAAGGGGGGG 351
consensus_2743#1 TTTCCACTGAACCCCCGGGGGGTATCCGGGACCCACCTTTTGGCCC-------------- 346
consensus_2743#2 AAAGCAAAAAAATTG-GAAAGACCTCAAAAAAAAAACCCCCGGGGGGGCGC--------- 320
* ** * * * * * **
consensus_2743#0 TGGGGGGGGGCGGGCGGGAGGGGGGGGGGG 381
consensus_2743#1 ------------------------------
consensus_2743#2 ------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |