These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 626 fasta sequence [AGTGAGCGAGAGACACCATGAAGGCGTCCGGCAC-ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGACAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC] [+] EMBL CA589497 [AGTGAGCGAGAGACACCATGAAGGCGTCCGGCAC ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAATAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGA ] [+] EMBL FR0056897 [ TCCGGCACAACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGGCACCGTGCACGTGCCCA ] [+] EMBL CA846925 [ GCAC ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCA ] [-] EMBL CA332210 [ AC ACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCCTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGAC ] [-] EMBL CA846824 [ CGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGCCAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC] [+] EMBL FR0057129 [ TATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGNGCCAACACAAACCTCGCTTCACCACCAAGCGACCAGACACCTTCTACTGAGATGGg ] [+] EMBL FR0056144 [ AAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCANAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCG ] [+] EMBL FR0056213 [ GCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAACGTCCAGGTGATTGCTGCCAGCAAGTGTCGCAAACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTGCCCg ] [+] EMBL FR0058658 [ GCGCCTGCTGCCCTCTGGGGAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGGGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGACCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGGACAGAGACCTGACCACCTCTGGAGCCGGCACGCAGGGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATTCAGATCATG ] [+] EMBL FR0056200 [ cGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGGCGCCAACCAGATTGTGGTAAAGTCTCGCTTCTGGTACGTTGTTTCCCAACTAAGGCATATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCGTGATGGTAAAGACTTTTGGCA ] [+] EMBL FR0056473 [ TGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAGAGATCAAGTT CCCCTCCCCCATCGGG ] [+] EMBL FR0057471 [ CCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAGAGATCAGGTTC ] [+] EMBL CA845636 [ AAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGTCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGT ] [+] EMBL FR0057044 [ AAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCANAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTT ] [+] EMBL CA846624 [ TCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGTTTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTCCCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACCTTCTACTGAGATGGTTTTCATTGT ] [+] EMBL FR0057393 [ CTCCTCTGTACCGGATGAGGATCTTTGCCCCCAACCACATTGTGGCAAAGTCTCGCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATGAAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAGGTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTACAGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGCGCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCCAACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCANAGATCAAGTT CCCCTCGCCCATCGGGTCCTGCGGCGCCAACACA ] consensusID : consensus_2753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [CACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTTCTCTGTACCGGAGAGGATCTTTGGCCCCCAACACATTGTGGCAAAGTCTNCGCTCTCGGTACTTGGTTTCCCACTTAAGGAGATGAAAAAGGGCCTCGGGGAGAATGGCTACTGGGGCCTGGGCCACCAAAAAAACC] [+] EMBL CA588953 [CACTTCGGGAATATAAAGTCATTGGGCGCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTTCTCTGTACCGGAGAGGATCTTTGGCCCCCAACACATTGTGGCAAAGTCTNCGCTCTCGGTACTTGGTTTCCCACTTAAGGAGATGAAAAAGGGCCTCGGGGAGAATGGCTACTGGGGCCTGGGCCACCAAAAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2753#0 AGTGAGCGAGAGACACCATGAAGGCGTCCGGCACACTTCGGGAATATAAAGTCATTGGGC 60 consensus_2753#1 ---------------------------------CACTTCGGGAATATAAAGTCATTGGGC 27 *************************** consensus_2753#0 GCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTCCTCTGTACCGGATGAGGATCTTTGCCC 120 consensus_2753#1 GCCTGCTGCCCTCTGCCAAGAATCCTGCCCCTTCTCTGTACCGGA-GAGGATCTTTGGCC 86 ******************************** ************ *********** ** consensus_2753#0 CCAACCACATTGTGGCAAAGTCTC-GCTTCTGGTACTTTGTTTCCCAGCTAAGGAAGATG 179 consensus_2753#1 CCCAACACATTGTGGCAAAGTCTNCGCTCTCGGTACTTGGTTTCCCACTTAAGGA-GATG 145 ** * ****************** *** ******* ******** ****** **** consensus_2753#0 AAGAAGGCCTCGGGCGAGATTGTCTACTGTGGCCTGGTCCACGAGAAGACGCCCCTGAAG 239 consensus_2753#1 AAAAAGGGCCTCGGGGAGAATGGCTACTGGGGCCTGGGCCACCAAAAAAACC-------- 197 ** **** * ** **** ** ****** ******* **** * ** * * consensus_2753#0 GTAAAGAATTTTGGTATCTGGCTGCGCTATGATTCTCGTAGTGGAACTCACAACATGTAC 299 consensus_2753#1 ------------------------------------------------------------ consensus_2753#0 AGAGAGTACAGAGACCTGACCACCTCTGGAGCCGTCACGCAGTGCTATCGTGATATGGGC 359 consensus_2753#1 ------------------------------------------------------------ consensus_2753#0 GCCCGCCACCGTGCACGTGCCCACTCCATCCAGATCATGAAGGTCCAGGTGATTGCTGCC 419 consensus_2753#1 ------------------------------------------------------------ consensus_2753#0 AACAAGTGTCGCAGACCTGCCATCAAGCAATTCCACGACTCAAAGATCAAGTTCCCCCTC 479 consensus_2753#1 ------------------------------------------------------------ consensus_2753#0 CCCCATCGGGTCCTGCGGCGCCAACACAAACCTCGCTTCACCACCAAGCGACCAAACACC 539 consensus_2753#1 ------------------------------------------------------------ consensus_2753#0 TTCTACTGAGATGGTTTTCATTGTTTTCGCGAGGAAATAAAACTACGATGACAAAAAAAA 599 consensus_2753#1 ------------------------------------------------------------ consensus_2753#0 AAAAAAAAAAACTCGAGACTAGTTCTC 626 consensus_2753#1 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |