These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 866 fasta sequence [GACGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC-GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT-CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC-GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA-GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAAA] [+] EMBL CA846612 [GACGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTAC ] [+] EMBL BU808611 [ CGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGT ] [+] EMBL CA340927 [ tttGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCC ] [+] EMBL FR0055439 [ GGCTTTCGCGGGGGTTTTGGCGCAGGTGGCCGCGGTCGTGGCCGC GGACGCTGTAGAGGCCGTGTTAGGGGACGCGGTGCCCGGCGCGGCAGGTCCGAGGACAAGGAATGTGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTAGCTGTACTCTCTGCCCATCATGGAGTCTGAGATCATTGACTTCTTCCTGCGATCTGCTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAGCAGTCCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGACGACTACAA ] [+] EMBL FR0055463 [ CCTTCCCGGGGGATTTGGCGCAGGTGGACGCGGTCGGGGCCGCGGGACGCTGTAGAGGCCGTGGTAGGGGACGCGGTGCCCGGCGCGGCAAGTCCGACGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGGCACCGCCATCCCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGACAGGTTATTGGGGA ] [+] EMBL FR0058346 [ CGCAGGTGGACGCGGTCGGGGCCGC GGACGCGGGAGATGCCGTGGAAGGAGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGTTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGGGCTCAAGAACATGCCTGTCCAGAAACAGACCCGG ] [+] EMBL FR0055398 [ aCAGGTGGACGCGGTCGGGGCCGC GGACGCGGAAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGGCAT CCGTGGGGCTATCATCCTTGCCAAGCTGTCCATTGTCACCGTCATGAGAGGGTACTGGGGAAACAAGATCGGTGGGCGCCATACCGT ] [+] EMBL FR0061812 [ GTGGACGCGAGCGGGGCCGC GGACGCGGGAGAGGCCGTGGAAGGGGCCGCGGTGCCCGCGGCGGCAAGTCCGAGGACAAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGTTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGA ] [+] EMBL FR0055575 [ AAGTTGGGTCGCTTGGTTAAGGACATGAAGATCAGGACTCAAGAGGAGATCTATCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGACACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTTACCTGCAAGGTGACCGGCCGCTGCGGCTC GGTCCTGGTGC ] [+] EMBL FR0056820 [ CCCATCAAGGAGTCTGAGATCATTGACTTCTTCCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTCGGGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGGATCGTGTCGGGTCACGTGCCCAAGAAGCTGCTCATGATGGGCGGTATTGATGACTGCGACACCTCCGCC ] [+] EMBL FR0056679 [ GCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTCGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACAGTCTTCACCAAGTCTC ] [+] EMBL CA845299 [ CAATGGTCACGTGGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCAT CCGTGGGGCGATCATCCTTGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAA ] [+] EMBL FR0056429 [ TGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAAGGACTCACACCAGGGTGTCTGTGCAGA ] [+] EMBL FR0056484 [ CAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCCCCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTC GGTCCTGGTGCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGCAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCT ] [+] EMBL CA330563 [ GCGTCTCATCCCGGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAAA] [+] EMBL CA846782 [ GCTCCCGTGCCCAAGAAGCTGCTCATGATGGCCGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAAA] [+] EMBL CA330475 [ CACAGCCACCCTTGGAAACTTTGCCAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAAGGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAA GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAA ] [+] EMBL CA330845 [ GACTCACACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTTGAGAACGGCTGAATAAAATCCTGAAA ] consensusID : consensus_2773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GCCCGCGTGCCCGCTGCTGGAAGTCCGAACACAATTAATGCCTTCCATTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTTGGTCTCTCTGCCCATCAAGGAGTCTGACATCATTGACTTCTTCCTTGGATCTGGCCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAA] [+] EMBL FR0061102 [GCCCGCGTGCCCGCTGCTGGAAGTCCGAACACAATTAATGCCTTCCATTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACTCTAGAGGAGATCTATCTTGGTCTCTCTGCCCATCAAGGAGTCTGACATCATTGACTTCTTCCTTGGATCTGGCCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2773#0 GACGCCGGTGGTAGGGGAGGCTTTCGCGGAGGTTTTGGCGCAGGTGGACGCGGTCGGGGC 60 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 CGCGGACGCGGCAGAGGCCGTGGAAGGGGCCGCGGTGCCCGGGGCGGCAAGTCCGAGGAC 120 consensus_2773#1 ---------------------------GCCCGCG-TGCCCGCTGCTGGAAGTCCGAACAC 32 * ***** ****** ** * ******** ** consensus_2773#0 AAGGAATGGGTTCCAGTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACT 180 consensus_2773#1 AATTAATGCCTTCCATTCACCAAGCTGGGTCGCCTGGTTAAGGACATGAAGATCAAGACT 92 ** **** ***** ******************************************** consensus_2773#0 CTAGAGGAGATCTATCT-GTACTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTCTT 239 consensus_2773#1 CTAGAGGAGATCTATCTTGGTCTCTCTGCCCATCAAGGAGTCTGACATCATTGACTTCTT 152 ***************** * ************************ ************** consensus_2773#0 CCTGGGATCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAACAGACCCG 299 consensus_2773#1 CCTTGGATCTGGCCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAA----------- 201 *** ******** *********************************** consensus_2773#0 GGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGTCACGT 359 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 GGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACCGCCATCCGTGGGGCGATCATCCT 419 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 TGCCAAGCTGTCCATTGTCCCCGTCAGGAGAGGTTATTGGGGAAACAAGATCGGTAAGCC 479 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 CCACACCGTACCCTGCAAGGTGACGGGCCGCTGCGGCTCGGTCCTGGTGCGTCTCATCCC 539 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 GGCACCCCGTGGTACTGGAATCGTGTCGGCTCCCGTGCCCAAGAAGCTGCTCATGATGGC 599 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 CGGTATTGATGACTGCTACACCTCCGCCCGAGGCTGCACAGCCACCCTTGGAAACTTTGC 659 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 CAAGGCCACCTTTGACGCCATCTCAAAGACGTACAGCTACTTGACCCCTGACCTGTGGAA 719 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 GGAGACCGTCTTCACCAAGTCTCCCTACCAGGAGTTCACGGACCATCTGGCCAAGACTCA 779 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 CACCAGGGTGTCTGTGCAGAGGGGACAGACCATGCAGGCACCCGCCTCATAAACACCGTT 839 consensus_2773#1 ------------------------------------------------------------ consensus_2773#0 GAGAACGGCTGAATAAAATCCTGAAAA 866 consensus_2773#1 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |