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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 523 fasta sequence
[AATTCGGCACGAG---AGGCGAAGAAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT-GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGACTAAAAAGAAAAGAAA]
[-] EMBL CA588807 [AATTCGGCACGAGCGAAGGCGAAGAAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTC ]
[+] EMBL CA340947 [ GCACGAG AGGCGAAGAAGGAAGTGGTTTCTGCCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAAT ]
[+] EMBL CA330189 [ AAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGA ]
[+] EMBL CA330401 [ GAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAATAATATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGG ]
[+] EMBL FR0058008 [ AGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACT ]
[+] EMBL FR0057277 [ TGGTCCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTAGCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAGACATACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGAGGTTGCCAAAGTCAACACTCTAATCAGGCCTGACGGTGAAAACATAGGGTATGGTTCGCTGGCACCAGATTACGAT GCATTGGGT ]
[+] EMBL CA341125 [ CCCTGTCAAGACTGAAGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATT ]
[+] EMBL FR0056892 [ CAAGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCANACAAGATTGGCATCATCTAAACTGGCAGAA ]
[+] EMBL FR0055209 [ AGTCAAAGGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCTTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGACTAAACCGCAAAGAAA]
[+] EMBL FR0056685 [ GGCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAGACTGGCAGAAAGGG ]
[+] EMBL FR0055819 [ GGCTCTGAAGGCCAAAAGGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAGACACCAGATCAAGCACGCTGTCAAGAAGCTGTAGGACATTGATGTTGCCAAAGTCAGCACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGGAACAGATTACGATGGCATTGGAT ]
[+] EMBL FR0057015 [ GGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGAT ]
[+] EMBL CA340965 [ GCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATAT ]
[+] EMBL CA844854 [ GTGTACACAGCCAGGGGAGGAAGAAGATCAGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGTCAATAATTCACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGCATGTTCGTCTGGTACCAGATTACGAT GCATTGGATGTTGCCAAC ]
[+] EMBL CA330659 [ CAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATT ]
[+] EMBL CA330541 [ AAGTTGGATCACTATGCTATCATCAAGTTCCCCCTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATT ]
[+] EMBL FR0056826 [ TAACACACTTGTGTTCATCGTGGACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTGACTAAAAAAA ]
[+] EMBL CA330365 [ AGCTGTATGACATTGATGTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTGGCACCAGATTACGAT GCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGAAAGGGCTTGAATAAATATTTGTATTG ]
consensusID : consensus_2775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[NCAAGGGCGCACACAGCCAGAGGAGGAAGAAGANCAGGACTTCTCCCCCCCAAAAGGGCNCCCAAACTCTGCGNCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCCCCCCGGAGGAACAAGTCGGACCACTATGCTATCAACAAGGCCCCCCAGACGACAGAGCCCGCCATGAAGAAGATAGAGGATAATAACCCACTTGAGATCACCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGACAAGAAGCTGTATGACATTGATGTTGCCAAAGCCAACACTCCCAACAGACCAGACGGGGAAAAGAAGGCGCAAGGTCCTCTGGCCCCCCACAACGAAGCCCCGGACGAA]
[+] EMBL CA846413 [NCAAGGGCGCACACAGCCAGAGGAGGAAGAAGANCAGGACTTCTCCCCCCCAAAAGGGCNCCCAAACTCTGCGNCTCCGCAGGCAGCCCAAGTACCCTCGCAAAAGTGCCCCCCGGAGGAACAAGTCGGACCACTATGCTATCAACAAGGCCCCCCAGACGACAGAGCCCGCCATGAAGAAGATAGAGGATAATAACCCACTTGAGATCACCGTGGATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGACAAGAAGCTGTATGACATTGATGTTGCCAAAGCCAACACTCCCAACAGACCAGACGGGGAAAAGAAGGCGCAAGGTCCTCTGGCCCCCCACAACGAAGCCCCGGACGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2775#0 AATTCGGCACGAGAGGCGAAGAAGGAAGTGGTCCCTGTCAAGACTGAAGCCAAGTCAAAG 60
consensus_2775#1 ------------------------------------------------------------
consensus_2775#0 GCTCTGAAGGCCAAAAAGGCCGTGCTCAAGGGTGTACACAGCCAGAGGAGGAAGAAGATC 120
consensus_2775#1 -------------------------NCAAGGGCGCACACAGCCAGAGGAGGAAGAAGANC 35
****** * *********************** *
consensus_2775#0 AGGACTTCTCCAACCTTCCGTCGCCCCAAAACTCTGCGTCTCCGCAGGCAGCCCAAGTAC 180
consensus_2775#1 AGGACTTCTCCCCCCCAAAAGGGCNCCCAAACTCTGCGNCTCCGCAGGCAGCCCAAGTAC 95
*********** ** ** ** ********** *********************
consensus_2775#0 CCTCGCAAAAGTGCTCCCCGTAGGAACAAGTTGGATCACTATGCTATCATCAAGTTCCCC 240
consensus_2775#1 CCTCGCAAAAGTGCCCCCCGGAGGAACAAGTCGGACCACTATGCTATCAACAAGGCCCCC 155
************** ***** ********** *** ************* **** ****
consensus_2775#0 CTGACTACAGAGTCTGCCATGAAGAAGATAGAGGATAATAACACACTTGTGTTCATCGTG 300
consensus_2775#1 CAGACGACAGAGCCCGCCATGAAGAAGATAGAGGATAATAACCCACTTGAGATCACCGTG 215
* *** ****** * *************************** ****** * *** ****
consensus_2775#0 GACGTCAAGGCAAACAAACACCAGATCAAGCACGCTGTCAAGAAGCTGTATGACATTGAT 360
consensus_2775#1 GATGTCAAGGCAAACAAACACCAGATCAAGCACGCTGACAAGAAGCTGTATGACATTGAT 275
** ********************************** **********************
consensus_2775#0 GTTGCCAAAGTCAACACTCTAATCAGACCTGACGGTGAAAAGAAGGCGTATGTTCGTCTG 420
consensus_2775#1 GTTGCCAAAGCCAACACTCCCAACAGACCAGACGGGGAAAAGAAGGCGCAAGGTCCTCTG 335
********** ******** * ****** ***** ************ * * ** ****
consensus_2775#0 GCACCAGATTACGATGCATTGGATGTTGCAAACAAGATTGGCATCATCTAAACTGGCAGA 480
consensus_2775#1 GCCCCCCACAACGAAGCCCCGGACGAA--------------------------------- 362
** ** * **** ** *** *
consensus_2775#0 AAGGGCTTGAATAAATATTTGTATTGACTAAAAAGAAAAGAAA 523
consensus_2775#1 -------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |