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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1021 fasta sequence
[GATCGTGTCCTGCCTCGCCTTCGTCAGCGCCGCCTACGGCTGTGGCGTTCCCGCCATCTCTCCCCAGGTGAGCGGCTATGCCCGCATTGTCAATGGCGAGGAGGCTGTCCCTCACTCCTGGCCCTGGCAGGTGTCTCTTCAGCAATCCAACGGCTTCCACATCTGTGGAGGATCTCTGATCAATGAGAACTGGGTGGTGACCGCCGCTCACTGTAACGTCAGGACCTACCACAATGTGATTGCTGGAGAACACAATAAGGGCTATGGCTCCAGCGAGGATGTCCAGATTCTGAAGCCTGCCAGGGTGTTCACTCATCCCAGGTGGAATGCCTACACCATCAACAACGACATCGCCCTCATCAAGCTGTCCACCCCCGCTCGCCTGGGCACCAACGTGTCTCCCGTCTGCCTGGCTGAGGCCACCGATGTCTTTGCCGCTGGAATGACCTGCGTCACCTCTGGCTGGGGTCTGACCCGCTACAATGCTCCCAGTACTCCCAACAACCTGCAGCAGGCTGCTCTGCCTCTGCTGTCCAACGAGCAGTGCAAGAAACACTGGGGCAGCAACATCTCAGATGTGATGATCTGTGCTGGAGGAGCTGGAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCTGGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCGCCCCCCCCCCTTTTTTTTTCTTTATTGGGGGGGG]
[+] EMBL CA330098 [GATCGTGTCCTGCCTCGCCTTCGTCAGCGCCGCCTACGGCTGTGGCGTTCCCGCCATCTCTCCCCAGGTGAGCGGCTATGCCCGCATTGTCAATGGCGAGGAGGCTGTCCCTCACTCCTGGCCCTGGCAGGTGTCTCTTCAGCAATCCAACGGCTTCCACTTCTGTGGAGGATCTCTGATCAATGAGAACTGGGTGGTGACCGCCGCTCACTGTAACGTCAGGACCTACCATAATGTGATTGCTGGAGAACACAATAAGGGCTATGGCTCCAACGAGGATGTCCAGATTCTGAAGCCTGCCAGGGTGTTCACTCATCCCAGGTGGAATGCCTACACCATCAACAACGACATCGCCCTCATCAAGCTGTCCACCCCCGCTCGCCTGGGCACCAACGTGTCTCCCGTCTGCCTGGCTGAGGCCACCGATGTCTTTGCCGCTGGAATGACCTGCGTCACCTCTGGCTGGGGTCTGACCCGCTACAATGCTCCCAGTACTCCCAACAACCTGCAGCAGGCTGCTCTGCCTCTGCTGTCCAACGAGCAGTGCAAGAAACACTGGGGCAGCAACATCTCAGATG ]
[+] EMBL FR0057868 [ ACATCTGTGGAGGATCTCTGATCAATGAGAACTGGGTGGTGACCGCCGCTCACTGTAACGTCAGGACCTACCACAATGTGATTGCTGGAGAACACAATAAGGGCTATGGCTCCAGCGAGGATGTCCAGATTCTGAAGCCTGCCAGGGTGTTCACTCATCCCAGGTGGAATGCCTACACCATCAACAACGACATCGCCCTCATCAAGCTGTCCACCCCCGCTCGCCTGGGCACCAACGTGTCTCCCGTCTGCCTGGCTGAGGCCACCGATGTCTTTGCCGCTGGGATGACCTGCGTCACCTCTGGCTGGGGTCTGACCCGCTACAATGCTCCCAGTACTCCCAACAACCTGCAGCAAGCTGCTCTGCCTCTGCTGTCCAACGAGCAGTGCAAGACACACTGGGGCAGCATCATCTCAGATGTGATGATCCGTGCTGGAGGAGCTGGAGCCA ]
[+] EMBL FR0057950 [ TGAAGCCTGCCAGGGTGTTCACTCATCCCAGGTGGAATGCCTACACCATCAACAACGACATCGCCCTCATCAAGCTGTCCACCCCCGCTCGCCTGGGCACCAACGTGTCTCCCGTCTGCCTGGCTGAGGCCACCGATGTCTTTGCCGCTGGAATGACCTGCGTCACCTCTGGCTGGGGTCTGACCCGCTACAATGCTCCCAGTACTCCCAACAACCTGCAGCAGGCTGCTCTGCCTCTGCTGTCCAACGAGCAGTGCAAGAAACACTGGGGCAGCAACATCTCAGATGTGATGATCTGTGCTGGAGGAGCTGGAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCTGGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCcg ]
[+] EMBL CA333616 [ CCTGGCTGAGGCCACCGATGTCTTTGCCGCTGGAATGACCTGCGTCACCTCTGGCTGGGGTCTGACCCGCTACAATGCTCCCAGTACTCCCAACAACCTGCAGCAGGCTGCTCTGCCTCTGCTGTCCAACGAGCAGGGCAAGAAACACTGGGGCATTTACTCCTCAGATGCGATGATCTGTGCTGGAGGAGCTGGAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGCGCCTGGACTCTGGATGGTATCGTCTCCTGGGGAAGAAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGAC ]
[+] EMBL CA330114 [ TGGGGCAGCAACATCTCAGATGTGATGATCTGTGCTGGAGGAGCTGGAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCTGGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAA ]
[+] EMBL CA330105 [ GATGATCTGTGCTGGAGGAGCTGGAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCTGGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAA ]
[+] EMBL CA330896 [ GATCTGTGCTGGAGGAGCTGGAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCTGGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCATANCTTCGCCGCCAACTAAACCCTCACAGGCAGCCCGCTAAAGCCTTAACCTGTTGGTCCTGAGTCCTGAACCTACCAGGGCCAGGACGACTGTCAGAGGTTGAAAATGATCAATAATAAAAACCATTAA ]
[+] EMBL CA330070 [ GGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCTGGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCAT ]
[+] EMBL CA333604 [ CACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATTTTTAATAAAAACCATTAAC ]
[+] EMBL FR0057925 [ TCTGAGTCCTGAACCTGCCAGGCCCAGTACGAGGGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCGCCCCCCCCCCTTTTTTTTTCTTTATTGGGGGGGG]
[+] EMBL CA845400 [ TGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAA ]
[+] EMBL CA845180 [ CAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCCATAATAAAAACCATTAA ]
consensusID : consensus_2776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 357 fasta sequence
[GTAAGATCACCTCCAACATGTTCTGTGCTGGAGTCTCCCTGGCAGGAGTCCTCGTGCCGAATTCGGCACGAGAGCAGCCGTTGCTCCACCACCACTCCTGACGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAACAAC-------AAAAAAAAAAAAAAAAAAACCCGGGGGGGGGCCCGGGACCCAAATTTTGGTCCCTTTAAGGGGGGGTTAAACGGGGGGGC]
[+] EMBL CA330095 [GTAAGATCACCTCCAACATGTTCTGTGCTGGAGTCTCCCTGGCAGGAGTCCTCGTGCCGAATTCGGCACGAGAGCAGCCGTTGCTCCACCACCACTCCTGCCGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAA ]
[+] EMBL FR0057839 [ CCACTCCTGACGTCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAACAAC AAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGACCCAATTTTTGGTCCCTTTAAGGGGGGGTTAAACGGGGGGGC]
[+] EMBL FR0057941 [ TAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAACAACAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGGGGGCCCCGGACCCAAATT ]
consensusID : consensus_2776#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[GGTCAGCGCCGCCTACGGCTGTGGCGTTCCCGCCATGCCGGCCAATCAGATCCTCCCCACAGCCAGGGAGACTTGGCTGGCTCTCATGACCATCATGAATCACACCTTCAAGAACCCCTATTAAGTCAGTGGGTTAGCTCTACTATAGTCTAGCTACTAGCACTGTAGAACTGAATGGAGACCGACGATCACTGTAACGTCAGGACCTACCACAATGTGATTGCTGGAGAACACAATAAGGGCTATGGCTCCAACGAGATGTCCAGATTCTGAAGCCTGCCAGGGTGTTCACTCATCCCCAGTGGAATCCCTACACCATCAACAACGACCATCGCCTCAT]
[+] EMBL FR0057913 [GGTCAGCGCCGCCTACGGCTGTGGCGTTCCCGCCATGCCGGCCAATCAGATCCTCCCCACAGCCAGGGAGACTTGGCTGGCTCTCATGACCATCATGAATCACACCTTCAAGAACCCCTATTAAGTCAGTGGGTTAGCTCTACTATAGTCTAGCTACTAGCACTGTAGAACTGAATGGAGACCGACGATCACTGTAACGTCAGGACCTACCACAATGTGATTGCTGGAGAACACAATAAGGGCTATGGCTCCAACGAGATGTCCAGATTCTGAAGCCTGCCAGGGTGTTCACTCATCCCCAGTGGAATCCCTACACCATCAACAACGACCATCGCCTCAT]
consensusID : consensus_2776#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 252 fasta sequence
[TACTCCTACACCTTTGAGCTGAGGGACACTGGTCGCTATGGCTTCATCCTGCCGGCCAATCAGATCCTCCCCACAGCCAGGGAGACTTGGCTGGCTCTCATGACCATCATGAATCACACCTTCAAGAACCCCTATTAAGTCAGTGGGTTAGTTCTACTATAGTCTAGTTACTAGACTCTAGTAAATAAAAAAATATTATGAAGGCAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCGGGACCCAAGTTTT]
[+] EMBL FR0057909 [TACTCCTACACCTTTGAGCTGAGGGACACTGGTCGCTATGGCTTCATCCTGCCGGCCAATCAGATCCTCCCCACAGCCAGGGAGACTTGGCTGGCTCTCATGACCATCATGAATCACACCTTCAAGAACCCCTATTAAGTCAGTGGGTTAGTTCTACTATAGTCTAGTTACTAGACTCTAGTAAATAAAAAAATATTATGAAGGCAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCGGGACCCAAGTTTT]
[+] EMBL CA333626 [ AATCACACCTTCAAGAACCCCTATTAAGTCAGTGGGTTAGTTCTACTATAGTCTAGTTACTAGACTCTAGTAAATAAAAAAATATTATGAAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2776#2 -----------------------------------------------------------G 1
consensus_2776#3 ------------------------------------------TACTCCTACACCTTTGAG 18
consensus_2776#0 --------------------------------------GATCGTGTCCTGCCTCGCCTTC 22
consensus_2776#1 GTAAGATCACCTCCAACATGTTCTGTGCTGGAGTCTCCCTGGCAGGAGTCCTCGTGCCGA 60
consensus_2776#2 GTCAGCGCCGCCTACGGCTGTGGCGTTCCCGCCATGCCGGCCAATCAGATCCTCCCCAC- 60
consensus_2776#3 CTGAGGGACACTGGTCGCTATGGCTT---CATCCTGCCGGCCAATCAGATCCTCCCCAC- 74
consensus_2776#0 GTCAGCGCCGCCTACGGCTGTGGCGTTCCCGCCATCTCTCCCCAGGTGAGCGGCTATGC- 81
consensus_2776#1 ATTCGGCACGAGAGCAGCCGTTGCTCCACCACCACTCCTGACGTCTATGCCCGTGTCACC 120
* * * ** * ** * * * * * *
consensus_2776#2 AGCCAGGGAGACTTGGCTGGCTCTCATGACCATCATGAATCACACCTTCAAGAACCCCT- 119
consensus_2776#3 AGCCAGGGAGACTTGGCTGGCTCTCATGACCATCATGAATCACACCTTCAAGAACCCCT- 133
consensus_2776#0 CCGCATTGTCAAT-GGCGAGGAGGC-TGTCCCTCACTCCTGGCCCTGGCAGGTGTCTCTT 139
consensus_2776#1 ATGCTCCGTGGATGGGTTGAC-CAGATCCTCGCCGCCAACTAAACCCTCACAGGCAGCAC 179
* * * ** * * * * ** *
consensus_2776#2 -ATTAAG--TCAGTGGGTTAGCTCTA--CTATAGTCTAGCTA---CTAGCACTGTAGAAC 171
consensus_2776#3 -ATTAAG--TCAGTGGGTTAGTTCTA--CTATAGTCTAGTTA---CTAG-ACTCTAG--- 181
consensus_2776#0 CAGCAAT--CCAACGGCTTC-CACAT--CTGTGGAGGATCTC---TGATCAATG-AGAAC 190
consensus_2776#1 GCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGGCCCAGTACGACTGTCA 239
** * ** * * * * *
consensus_2776#2 TGAATGGAGACCGACGATCACTG--------TAACGTCAGGACCTACCACAATGTGATTG 223
consensus_2776#3 TAAATAAAAA------AATATTA--------TGAAGGCAAAAAAAAAAAAAAAAAACCTC 227
consensus_2776#0 TGGGTGGTGACCGCCGCTCACTG--------TAACGTCAGGACCTACCACAATGTGATTG 242
consensus_2776#1 GAAGTTGAAAATGATCAATAATAAAAACCATTAACAACAAAAAAAAAAAAAAAAAAACCC 299
* * * * * * ** * * * **
consensus_2776#2 CTGGAGAACACAATAAGGGCTATGGCTCCAACGAG-ATGTCCAGATTCTGAAGCCTGCCA 282
consensus_2776#3 GGGGGGGGCCCG----GGACCCAAGTTTT------------------------------- 252
consensus_2776#0 CTGGAGAACACAATAAGGGCTATGGCTCCAGCGAGGATGTCCAGATTCTGAAGCCTGCCA 302
consensus_2776#1 GGGGGGGGGCCCG---GGACCCAAATTTTGGTCCCTTTAAGGGGGGGTTAAACGGGGGGG 356
** * * ** * *
consensus_2776#2 GGGTGTTCACTCATCCCCAGTGGAATCCCTACACCATCAACAACGACCATCGCCTCAT-- 340
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 GGGTGTTCACTCATCCCAGGTGGAATGCCTACACCATCAACAACGACATCGCCCTCATCA 362
consensus_2776#1 C----------------------------------------------------------- 357
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 AGCTGTCCACCCCCGCTCGCCTGGGCACCAACGTGTCTCCCGTCTGCCTGGCTGAGGCCA 422
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 CCGATGTCTTTGCCGCTGGAATGACCTGCGTCACCTCTGGCTGGGGTCTGACCCGCTACA 482
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 ATGCTCCCAGTACTCCCAACAACCTGCAGCAGGCTGCTCTGCCTCTGCTGTCCAACGAGC 542
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 AGTGCAAGAAACACTGGGGCAGCAACATCTCAGATGTGATGATCTGTGCTGGAGGAGCTG 602
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 GAGCCACCTCCTGTATGGGGGATTCTGGTGGCCCTCTGGTCTGTGAGAAGGATGGTGCCT 662
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 GGACTCTGGTTGGTATCGTCTCCTGGGGAAGCAGCCGTTGCTCCACCACCACTCCTGCCG 722
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 TCTATGCCCGTGTCACCATGCTCCGTGGATGGGTTGACCAGATCCTCGCCGCCAACTAAA 782
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 CCCTCACAGGCAGCACGCTAAAGGCTTAACCTGTTGGTTCTGAGTCCTGAACCTGCCAGG 842
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 CCCAGTACGACTGTCAGAAGTTGAAAATGATCAATAATAAAAACCATTAACAACAAAAAA 902
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 ------------------------------------------------------------
consensus_2776#3 ------------------------------------------------------------
consensus_2776#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 962
consensus_2776#1 ------------------------------------------------------------
consensus_2776#2 -----------------------------------------------------------
consensus_2776#3 -----------------------------------------------------------
consensus_2776#0 AAAAAAAAAAAAAAGGGGGGGGGCGCCCCCCCCCCTTTTTTTTTCTTTATTGGGGGGGG 1021
consensus_2776#1 -----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |