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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 456 fasta sequence
[CCGGATCCGGCACGGG-CGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT-T-GAGAAATATTACAC-CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG-AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA]
[+] EMBL CA330795 [CCGAATTCGGCACGAG CGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCATNT GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCT ]
[+] EMBL CA591299 [ GATCCAACATGGGACGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTC ]
[+] EMBL CA846876 [ TCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TAGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGG ]
[-] EMBL CA588836 [ AGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAAAACGCCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTA ]
[+] EMBL CA341028 [ CAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TGGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGGCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACTATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA]
[+] EMBL CA847217 [ GTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACTCTCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGA ]
[+] EMBL FR0055618 [ GTGAAGAAGGCCGCTAGGG CAGCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACATGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGCAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGCGGGACAGTTACGTGTCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGCTGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCATCCCACCGTCGGCATGATCTTCAGGACACCCAGAGGAGTCTAGACGT ]
[+] EMBL CA844905 [ TGAAGAAGGCCGCTAGGGTCATCATNT GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGG ]
[+] EMBL CA844868 [ TGAAGAAGGCCGCTAGGGTCATCAT TNGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTG ]
[+] EMBL FR0057537 [ AAGAAAGGCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCAACGTCGGCATGAACTTCAGGGCACCCAGAGGAGTCTAAACGTCTGTCACATTT ]
[+] EMBL FR0056852 [ GAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGA ]
[+] EMBL FR0056174 [ CTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAA ]
[+] EMBL FR0055516 [ cAGGGTCATCAT TCGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACACGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAGCTTC ]
[+] EMBL FR0055778 [ GGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAGCCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ]
[+] EMBL FR0055924 [ GGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ]
[+] EMBL FR0055446 [ GTCATCAT T GAGAGATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACATGAGAGTGTGTGAGGAGATCGCCATCATCACCAGCATGCAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGCTGAAGCAGGATCCAGCGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAGTTACGTGCCAGAGGTCTCTGCTCTGGACCAGGGACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGCTGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGGATGTTCTTCAGGCCACCCAGCGGAGTCTAGACGTCTGTCACATTTTCTTCGAA ]
[+] EMBL FR0057273 [ ATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGGATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ]
[+] EMBL FR0057031 [ TATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCANGAAGCTTCGCAACANGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCT ]
[+] EMBL FR0056387 [ ATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ]
[+] EMBL CA847165 [ CCCAGCAAGCTGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGAC ]
consensusID : consensus_2789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence
[ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG]
[+] EMBL CA330213 [ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2789#0 CCGGATCCGGCACGGGCGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT 60
consensus_2789#1 ------------------------------------------------------------
consensus_2789#0 TGAGAAATATTACACCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGA 120
consensus_2789#1 -----------------------------ACTTTCACACTAACAAGAGAGTGTGTGAGGA 31
*******************************
consensus_2789#0 GATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTT 180
consensus_2789#1 GATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTT 91
***** ***************** ************************* *********
consensus_2789#0 GATGAAGAGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGA-AGAGG 239
consensus_2789#1 GATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACG 151
*************** ** ****** *********************** * * * *
consensus_2789#0 AGCGTGAGAGGAGGGACAATTACGT-GCCAGAGGTCTCTGCTCTGGACCAGGAACTCATC 298
consensus_2789#1 AGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATC 211
**** ************** *** * ** *** * *********************
consensus_2789#0 GAGGTTGATCCTGAC-ACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAA 357
consensus_2789#1 GAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAA 271
******* *** * *** **** ************************ *** ****
consensus_2789#0 CCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGAC 417
consensus_2789#1 CCCG-------------------------------------------------------- 275
** *
consensus_2789#0 GTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA 456
consensus_2789#1 ---------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |