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Takifugu rubripes
cluster # 2789 cluster # 2789       Sequences # 21       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2789#0 length = 456 sequences # 20  
consensus_2789#1 length = 275 sequences # 1  

consensusID : consensus_2789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 20
consensus length = 456
fasta sequence
                              [CCGGATCCGGCACGGG-CGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT-T-GAGAAATATTACAC-CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG-AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA]

[+] EMBL CA330795             [CCGAATTCGGCACGAG CGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCATNT GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCT         ]
[+] EMBL CA591299             [   GATCCAACATGGGACGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTC                                                              ]
[+] EMBL CA846876             [                     TCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TAGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGG    ]
[-] EMBL CA588836             [                       AGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAAAACGCCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTA                                          ]
[+] EMBL CA341028             [                            CAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TGGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGGCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACTATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA]
[+] EMBL CA847217             [                                   GTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACTCTCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGA  ]
[+] EMBL FR0055618            [                                   GTGAAGAAGGCCGCTAGGG CAGCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACATGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGCAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGCGGGACAGTTACGTGTCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGCTGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCATCCCACCGTCGGCATGATCTTCAGGACACCCAGAGGAGTCTAGACGT                                     ]
[+] EMBL CA844905             [                                    TGAAGAAGGCCGCTAGGGTCATCATNT GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGG    ]
[+] EMBL CA844868             [                                    TGAAGAAGGCCGCTAGGGTCATCAT TNGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTG     ]
[+] EMBL FR0057537            [                                      AAGAAAGGCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCAACGTCGGCATGAACTTCAGGGCACCCAGAGGAGTCTAAACGTCTGTCACATTT                          ]
[+] EMBL FR0056852            [                                        GAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGA                                        ]
[+] EMBL FR0056174            [                                                CTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAA              ]
[+] EMBL FR0055516            [                                                 cAGGGTCATCAT TCGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACACGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAGCTTC                                                              ]
[+] EMBL FR0055778            [                                                    GGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAGCCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA                 ]
[+] EMBL FR0055924            [                                                    GGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA                 ]
[+] EMBL FR0055446            [                                                     GTCATCAT T GAGAGATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACATGAGAGTGTGTGAGGAGATCGCCATCATCACCAGCATGCAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGCTGAAGCAGGATCCAGCGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAGTTACGTGCCAGAGGTCTCTGCTCTGGACCAGGGACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGCTGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGGATGTTCTTCAGGCCACCCAGCGGAGTCTAGACGTCTGTCACATTTTCTTCGAA                  ]
[+] EMBL FR0057273            [                                                        ATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGGATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA                 ]
[+] EMBL FR0057031            [                                                                      TATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCANGAAGCTTCGCAACANGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCT                                                                                                                                                                                ]
[+] EMBL FR0056387            [                                                                                                                                      ATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA                 ]
[+] EMBL CA847165             [                                                                                                                                         CCCAGCAAGCTGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGAC ]


>consensus_2789#0 CCGGATCCGGCACGGGCGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TGAGAAATATTACACCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGA GATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTT GATGAAGAGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGA GCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGA GGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCT GCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTC TGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA



consensusID : consensus_2789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence
                              [ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG]

[+] EMBL CA330213             [ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG]


>consensus_2789#1 ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTC GCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCA GAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCT CNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGC TGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2789#0      CCGGATCCGGCACGGGCGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT 60
consensus_2789#1      ------------------------------------------------------------
                                                                                  

consensus_2789#0      TGAGAAATATTACACCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGA 120
consensus_2789#1      -----------------------------ACTTTCACACTAACAAGAGAGTGTGTGAGGA 31
                                                   *******************************

consensus_2789#0      GATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTT 180
consensus_2789#1      GATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTT 91
                      *****  ***************** ************************* *********

consensus_2789#0      GATGAAGAGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGA-AGAGG 239
consensus_2789#1      GATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACG 151
                      *************** **  ****** *********************** *   * * *

consensus_2789#0      AGCGTGAGAGGAGGGACAATTACGT-GCCAGAGGTCTCTGCTCTGGACCAGGAACTCATC 298
consensus_2789#1      AGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATC 211
                      **** ************** *** * **     *** * *********************

consensus_2789#0      GAGGTTGATCCTGAC-ACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAA 357
consensus_2789#1      GAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAA 271
                      ******* ***   * ***   **** ************************ *** ****

consensus_2789#0      CCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGAC 417
consensus_2789#1      CCCG-------------------------------------------------------- 275
                      ** *                                                        

consensus_2789#0      GTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA 456
consensus_2789#1      ---------------------------------------
                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)