These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 456 fasta sequence [CCGGATCCGGCACGGG-CGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT-T-GAGAAATATTACAC-CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG-AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA] [+] EMBL CA330795 [CCGAATTCGGCACGAG CGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCATNT GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCT ] [+] EMBL CA591299 [ GATCCAACATGGGACGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTC ] [+] EMBL CA846876 [ TCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TAGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGG ] [-] EMBL CA588836 [ AGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAAAACGCCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTA ] [+] EMBL CA341028 [ CAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT TGGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGGCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACTATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA] [+] EMBL CA847217 [ GTGAAGAAGGCCGCTAGGGTCATCAT T GAGAAATATTACTCTCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGA ] [+] EMBL FR0055618 [ GTGAAGAAGGCCGCTAGGG CAGCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACATGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGCAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGCGGGACAGTTACGTGTCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGCTGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCATCCCACCGTCGGCATGATCTTCAGGACACCCAGAGGAGTCTAGACGT ] [+] EMBL CA844905 [ TGAAGAAGGCCGCTAGGGTCATCATNT GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGG ] [+] EMBL CA844868 [ TGAAGAAGGCCGCTAGGGTCATCAT TNGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTG ] [+] EMBL FR0057537 [ AAGAAAGGCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCAACGTCGGCATGAACTTCAGGGCACCCAGAGGAGTCTAAACGTCTGTCACATTT ] [+] EMBL FR0056852 [ GAAGGCCGCTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGA ] [+] EMBL FR0056174 [ CTAGGGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAA ] [+] EMBL FR0055516 [ cAGGGTCATCAT TCGAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACACGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAGCTTC ] [+] EMBL FR0055778 [ GGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCATGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAGCCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ] [+] EMBL FR0055924 [ GGTCATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ] [+] EMBL FR0055446 [ GTCATCAT T GAGAGATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACATGAGAGTGTGTGAGGAGATCGCCATCATCACCAGCATGCAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGCTGAAGCAGGATCCAGCGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAGTTACGTGCCAGAGGTCTCTGCTCTGGACCAGGGACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGCTGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGGATGTTCTTCAGGCCACCCAGCGGAGTCTAGACGTCTGTCACATTTTCTTCGAA ] [+] EMBL FR0057273 [ ATCAT T GAGAAATATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGGATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ] [+] EMBL FR0057031 [ TATTACAC CCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGCCATCATCCCCAGCANGAAGCTTCGCAACANGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCT ] [+] EMBL FR0056387 [ ATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAA ] [+] EMBL CA847165 [ CCCAGCAAGCTGCTTCGCAACAAGATCGCCGGGTATGTGACACATTTGATGAAG AGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGAAGAGGAGCGTGAGAGGAGGGACAATTACGTGCCAGAGGTCTCTGCTCTGGACCAGGAACTCATCGAGGTTGATCCTGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGACGTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGAC ] consensusID : consensus_2789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG] [+] EMBL CA330213 [ACTTTCACACTAACAAGAGAGTGTGTGAGGAGATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTTGATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACGAGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATCGAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2789#0 CCGGATCCGGCACGGGCGAGTCAGGACCAAGACGGTGAAGAAGGCCGCTAGGGTCATCAT 60 consensus_2789#1 ------------------------------------------------------------ consensus_2789#0 TGAGAAATATTACACCCGGCTGGGCAGCGACTTTCACACTAACAAGAGAGTGTGTGAGGA 120 consensus_2789#1 -----------------------------ACTTTCACACTAACAAGAGAGTGTGTGAGGA 31 ******************************* consensus_2789#0 GATCGCCATCATCCCCAGCAAGAAGCTTCGCAACAAGATCGCCGGGTATGTGACACATTT 180 consensus_2789#1 GATCGAGATCATCCCCAGCAAGAAACTTCGCAACAAGATCGCCGGGTATGAGACACATTT 91 ***** ***************** ************************* ********* consensus_2789#0 GATGAAGAGGATCCAGAGGGGTCCAGTCAGAGGAATCTCCATCAAACTGCAGGA-AGAGG 239 consensus_2789#1 GATGAAGAGGATCCATAGTTGTCCAGGCAGAGGAATCTCCATCAAACTGCCGCCCACACG 151 *************** ** ****** *********************** * * * * consensus_2789#0 AGCGTGAGAGGAGGGACAATTACGT-GCCAGAGGTCTCTGCTCTGGACCAGGAACTCATC 298 consensus_2789#1 AGCGCGAGAGGAGGGACAACTACTTTGCTCNTTGTCACAGCTCTGGACCAGGAACTCATC 211 **** ************** *** * ** *** * ********************* consensus_2789#0 GAGGTTGATCCTGAC-ACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCAGTCTGTCCAA 357 consensus_2789#1 GAGGTTGTTCCCCCCCACCCCCGAGAAGCTGAAGCTGCTGGACTTCGGCAGGCTGACCAA 271 ******* *** * *** **** ************************ *** **** consensus_2789#0 CCTGCAGGTCACTCAACCCACCGTCGGCATGAACTTCAGGACACCCAGAGGAGTCTAGAC 417 consensus_2789#1 CCCG-------------------------------------------------------- 275 ** * consensus_2789#0 GTCTGTCACATTTTCTTCCAAATAAAATCTTTTGGGACA 456 consensus_2789#1 --------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |