These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAAAAAAAA] [+] EMBL CA330288 [GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAAAAAAAA] consensusID : consensus_279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGCAAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTCATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAG] [+] EMBL CA847228 [ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGCAAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTCATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_279#0 ------------------------------------------------------------ consensus_279#1 ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGC 60 consensus_279#0 ------------------------------------------------------------ consensus_279#1 AAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTC 120 consensus_279#0 -------------GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACAT 47 consensus_279#1 ATGTGTGATACAGCCCCCGGCGCCCTG-GTCCTGGACCTGACAGGGAACCTGGAAAACAT 179 * * * * * * *** * **** ******************* consensus_279#0 AAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAA 107 consensus_279#1 AAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAA 239 ************************************************************ consensus_279#0 GGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGT 167 consensus_279#1 GGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGT 299 ************************************************************ consensus_279#0 GAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTA 227 consensus_279#1 GAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTA 359 ************************************************************ consensus_279#0 CGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACAC 287 consensus_279#1 CGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACAC 419 ************************************************************ consensus_279#0 CATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCT 347 consensus_279#1 CATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCT 479 ************************************************************ consensus_279#0 CACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCT 407 consensus_279#1 CACCATCAAG-------------------------------------------------- 489 ********** consensus_279#0 CCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGC 467 consensus_279#1 ------------------------------------------------------------ consensus_279#0 TCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTT 527 consensus_279#1 ------------------------------------------------------------ consensus_279#0 TGTCATTCCAAAAAAAAAA 546 consensus_279#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |