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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAAAAAAAA]
[+] EMBL CA330288 [GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAAAAAAAA]
consensusID : consensus_279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGCAAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTCATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAG]
[+] EMBL CA847228 [ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGCAAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTCATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_279#0 ------------------------------------------------------------
consensus_279#1 ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGC 60
consensus_279#0 ------------------------------------------------------------
consensus_279#1 AAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTC 120
consensus_279#0 -------------GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACAT 47
consensus_279#1 ATGTGTGATACAGCCCCCGGCGCCCTG-GTCCTGGACCTGACAGGGAACCTGGAAAACAT 179
* * * * * * *** * **** *******************
consensus_279#0 AAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAA 107
consensus_279#1 AAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAA 239
************************************************************
consensus_279#0 GGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGT 167
consensus_279#1 GGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGT 299
************************************************************
consensus_279#0 GAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTA 227
consensus_279#1 GAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTA 359
************************************************************
consensus_279#0 CGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACAC 287
consensus_279#1 CGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACAC 419
************************************************************
consensus_279#0 CATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCT 347
consensus_279#1 CATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCT 479
************************************************************
consensus_279#0 CACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCT 407
consensus_279#1 CACCATCAAG-------------------------------------------------- 489
**********
consensus_279#0 CCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGC 467
consensus_279#1 ------------------------------------------------------------
consensus_279#0 TCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTT 527
consensus_279#1 ------------------------------------------------------------
consensus_279#0 TGTCATTCCAAAAAAAAAA 546
consensus_279#1 -------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |