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Takifugu rubripes
cluster # 279 cluster # 279       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_279#0 length = 546 sequences # 1  
consensus_279#1 length = 489 sequences # 1  

consensusID : consensus_279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence
                              [GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAAAAAAAA]

[+] EMBL CA330288             [GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAAAAAAAA]


>consensus_279#0 GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACATAAAGAAGAGCACA TTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAG ATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAA ACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACC CCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAG TTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAGAAA GACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCTCCTCCTTTCTGTT ACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGCTCTCTCCGTCCAA CGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTTTGTCATTCCAAAA AAAAAA



consensusID : consensus_279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence
                              [ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGCAAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTCATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAG]

[+] EMBL CA847228             [ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGCAAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTCATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATAAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAGGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTGAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTACGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACCATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTCACCATCAAG]


>consensus_279#1 ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGC AAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTC ATGTGTGATACAGCCCCCGGCGCCCTGGTCCTGGACCTGACAGGGAACCTGGAAAACATA AAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAAG GTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGTG AAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTAC GAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACACC ATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCTC ACCATCAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_279#0      ------------------------------------------------------------
consensus_279#1      ATCCAGGAGCTGGACAAAGATGACGATAGCCTGCGCAGGTACAAGGAGGCGCTGCTGGGC 60
                                                                                 

consensus_279#0      ------------------------------------------------------------
consensus_279#1      AAAGCTAGCGTGGTTACAGATCCCAAACTGCCCAACGTCCATGTGACACGGATGACCCTC 120
                                                                                 

consensus_279#0      -------------GCGTGGTCACACCGCGTCTCTGTCCTGGCAGGGAACCTGGAAAACAT 47
consensus_279#1      ATGTGTGATACAGCCCCCGGCGCCCTG-GTCCTGGACCTGACAGGGAACCTGGAAAACAT 179
                                   *   * * * * * ***   * **** *******************

consensus_279#0      AAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAA 107
consensus_279#1      AAAGAAGAGCACATTTGTGCTGAAGGAGGGAGTGGACTACAAAATAAAGATCACTTTCAA 239
                     ************************************************************

consensus_279#0      GGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGT 167
consensus_279#1      GGTCAACAAGGAGATCGTCTCGGGCCTCAGATACACTCAAACATCCACCAGGAAAGGAGT 299
                     ************************************************************

consensus_279#0      GAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTA 227
consensus_279#1      GAAGGTTGACAAAACGGACTACATGGTGGGGAGCTACGGCCCCAGACCTGAGGAGGAGTA 359
                     ************************************************************

consensus_279#0      CGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACAC 287
consensus_279#1      CGAGTATGTCACCCCAGTCGAGGAGGCGCCGAAAGGGATGCTGGCCCGCGGCACCTACAC 419
                     ************************************************************

consensus_279#0      CATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCT 347
consensus_279#1      CATCAAATCTAAGTTCACCGATGATGACAAACACGATCATCTCTCCTGGGAATGGAACCT 479
                     ************************************************************

consensus_279#0      CACCATCAAGAAAGACTGGAAAGACTGATTCCCGCTCTCTCCCTCCTCCCCGTCTTCTCT 407
consensus_279#1      CACCATCAAG-------------------------------------------------- 489
                     **********                                                  

consensus_279#0      CCTCCTTTCTGTTACTTCTGATCAGTCTGCATCTGGATGATGTGTTGATTCAGCTTTTGC 467
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      TCTCTCCGTCCAACGACCCCCCCCGGTTTCTTTTTCCCTCCCCATGAATTCCAATCACTT 527
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      TGTCATTCCAAAAAAAAAA 546
consensus_279#1      -------------------
                                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)