These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 479 fasta sequence [GCATCATGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCCTGGGAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCCGGACCCAAGTTTTGGT] [-] EMBL CA588830 [GCATCATGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGA ] [-] EMBL CA588732 [GCATCATGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCAT ] [+] EMBL CA844880 [ TGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCC ] [+] EMBL CA330446 [ TGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACC ] [+] EMBL CA846833 [ TGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACC ] [+] EMBL CA330480 [ TGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCCTGGAAAAA ] [+] EMBL FR0055525 [ GCATGAACGTTCTCGCAGATGCTCTCATTAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGGATTATGGATCACGAAGAGGCCAGACGGGAACACACAGGAGGCACAATCCTTGGGTTCTTTTTCTAAAAT ] [+] EMBL CA844654 [ GAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCC ] [+] EMBL FR0055579 [ CTCGCATTTGCTCTCAGAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAATCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGGCTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGTCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGCTATATTGTGCTGAGAGCCTCAGCTGGGATTATGGATCACGAAGAGGCCAGTCGGGAACACACAGGATGCAATATCCTTGGGT ] [+] EMBL FR0055952 [ CTCTCAAAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGTCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGCGAAGTGGCAGAACAACCTGTTGCCCTCAAGGGAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGCTCACGAAGAGGCCAGACGGAAACACACAGGAGGCACAATCCTTGGCTTCGTTTTCTAAAATGCAAAGAACTGg ] [+] EMBL FR0058015 [ AAAGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACG ] [+] EMBL FR0057706 [ AGCATCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGGAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCCTGGGAAANACAAAAAAAAA ] [+] EMBL FR0056392 [ tttGCATCACCATTGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGTATTATGGGTCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGGTTCTTTTTCTAAAATGCATAGAACTGCACAATAAAAAACCC ] [+] EMBL CA844600 [ TCAACAATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCC ] [+] EMBL FR0056918 [ AATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGGAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGGAGCACACAGGAGGCAAAATCCTTGGAT ] [+] EMBL FR0055753 [ AATGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGGAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGGCAGACGGGAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCCTGGGAAAGAATTTGTAAAAACCCTCAGGGGGG ] [+] EMBL FR0055181 [ TGCTGAGAAGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCCTGGTAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGACCCAAGTTTTGGT] [+] EMBL FR0056519 [ CTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAGGTAAA ] [+] EMBL CA330591 [ TGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCTACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACC ] consensusID : consensus_2797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence [TTGGGAAACGCAAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCANAATAAAAAACCCTGGAAAAAAAAATTTTAAAAAAACAAAAAAACTCCCGGGGGGG] [+] EMBL FR0055776 [TTGGGAAACGCAAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCANAATAAAAAACCCTGGAAAAAAAAATTTTAAAAAAACAAAAAAACTCCCGGGGGGG] [+] EMBL CA330520 [ TGCTCCAAGGTTATTGTGCGCTTCCTCACTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCGGAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTTTTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGTTTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGAAACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAAAAAACCCTGGAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2797#0 GCATCATGGTGCGCATGAACGTTCTCGCAGATGCTCTCAAAAGCATCAACAATGCTGAGA 60 consensus_2797#1 ------------------------------------------------------------ consensus_2797#0 AGCGTGGGAAACGCCAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCA 120 consensus_2797#1 ---TTGGGAAACGCAAGGTCCTGATCAGGCCCTGCTCCAAGGTTATTGTGCGCTTCCTCA 57 ********** ********************************************* consensus_2797#0 CTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCG 180 consensus_2797#1 CTGTCATGATGAAGCACGGTTACATTGGTGAGTTTGAGATCATTGATGATCACAGAGCCG 117 ************************************************************ consensus_2797#0 GAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTT 240 consensus_2797#1 GAAAAATCGTCGTCAATCTCACAGGCAGACTGAACAAGTGTGGTGTGATCAGCCCACGTT 177 ************************************************************ consensus_2797#0 TTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGT 300 consensus_2797#1 TTGACCTCCAGCTCAAGGACCTGGAGAAGTGGCAGAACAACCTGTTGCCCTCAAGGCAGT 237 ************************************************************ consensus_2797#0 TTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGA 360 consensus_2797#1 TTGGATATATTGTGCTGACAACCTCAGCTGGCATTATGGATCACGAAGAGGCCAGACGGA 297 ************************************************************ consensus_2797#0 AACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCAAAATAA 420 consensus_2797#1 AACACACAGGAGGCAAAATCCTTGGATTCTTTTTCTAAAATGCAAAGAACTGCANAATAA 357 ****************************************************** ***** consensus_2797#0 AAAACCCTGGGAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCCGGACCCAAGTTTTGGT 479 consensus_2797#1 AAAACCCTGGAAAAAAAAATTTTAAAAAAACAAAAAAACTCCCGGGGGGG--------- 407 ********** ******** **** * * ***** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |