cluster # 2848

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Takifugu rubripes
cluster # 2848 cluster # 2848 Sequences # 27 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2848#0 length = 528 sequences # 21
consensus_2848#1 length = 403 sequences # 2

consensus_2848#2 length = 389 sequences # 2
consensus_2848#3 length = 345 sequences # 2

consensusID : consensus_2848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 21
consensus length = 528
fasta sequence

                              [CTAAGGTGCTTGGTTCTTCTGCCGAAGCTAAGG-CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC-CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA-GGAAGAGTCTGA--AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAATAGAAAAAAAAAAAAGAGGGGGGGCCCGGTACCCAGTTTTTGTCCCC]

[+] EMBL CA846877             [CTAAGGTGCTTGCTTCTTCTGCCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGATTTTCTCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAA                                               ]
[+] EMBL CA847200             [   AGGTGCTTGGTTCTTCTGCCGAAGCTAAGGCCCCCTTATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAA                                                                   ]
[+] EMBL CA330264             [    GGTGCTTGGTTCTTCTGCCGAAGCTAAGG TTTCCCCCCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTTTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAAT                                              ]
[+] EMBL CA330039             [    GGTGCTTGGTTCTTCTGCCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAA                                                ]
[+] EMBL CA847092             [    aGAGCTTGGTTCTTCTGCCGAAGCTAGGC CCCC  CTCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTANAGTGGATGTTTTTGTAAAAACATTAAAA                                                         ]
[+] EMBL FR0056944            [         TTGGTTCTTCTGCCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGGAAGAGTCTGANNAGAGTCCn                                                                                                                     ]
[+] EMBL FR0055993            [         TTGGTTCTTCTGCCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGCGATGCTCCAGCCAAGGCAGAGGAGAAGAGAGAGGAGAACAA GGAAGAGTCTGA  AGAGTCCGATGATGAC                                                                                                             ]
[+] EMBL FR0056137            [           GGTTCTTCTGCCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAANATCATAAA                                                  ]
[+] EMBL CA845571             [           GGTTCTTCTGCCGAAGCTAAGG CCCCGAATTCGTCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGTTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAA                                                         ]
[+] EMBL FR0057105            [            GTTCTTCTGCCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGC                                                                                                                                                                                                        ]
[+] EMBL FR0055259            [                     CCGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACAT                                                              ]
[+] EMBL FR0057154            [                      CGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAATCCGATGATGACATGGGCTTTGGTCTCTTTGATTAA                                                                                     ]
[+] EMBL FR0055986            [                      CGAAGCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACA                                                               ]
[+] EMBL FR0057297            [                          GCTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGAT                                                                              ]
[+] EMBL FR0055386            [                           CTAAGG CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGATGAGAAGAAAGAGGAGAAGAA GGGAGAGTCTGA  ACAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTCAAAACATTAAAATCATAGAA                                                 ]
[+] EMBL FR0056102            [                                G CCCCGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAATGCAGAGGAGAAGAAAGAGGAGAAGAC AGGAGAGTCTGA  AGAGTCCGA                                                                                                                    ]
[+] EMBL FR0057291            [                                     CGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGGGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGGCTCTTTGATTAAAGTGGAT                                                                              ]
[+] EMBL FR0057201            [                                     CGAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAATTGAAAAAAAAAAAAAA                              ]
[+] EMBL FR0055785            [                                       AATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA AGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTGAAAACATTAAGATCATAGGA                                                 ]
[+] EMBL FR0056282            [                                                       CCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCAC CGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTTGTAAAACATTAAAATCATAAA                                                  ]
[+] EMBL FR0056600            [                                                                                                                                                                                                                                          GCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAA GGAAGAGTCTGA  AGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCCGGTACCCAGTTTTTGTCCCC]




>consensus_2848#0
CTAAGGTGCTTGGTTCTTCTGCCGAAGCTAAGGCCCCGAATCCGGCGACTAGCACCCCCA
TTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCG
AGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGG
ACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCACCGTGGAGCCTTTCTGGCCAAGTC
TGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTG
GTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAG
CCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATGATGACA
TGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAA
ATAGAAAAAAAAAAAAGAGGGGGGGCCCGGTACCCAGTTTTTGTCCCC

consensusID : consensus_2848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 403
fasta sequence

                              [TCTTCTGCCCGATGTTAAGGCCCGAAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGATAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTCAAAACATTAAAATCATAAAAAATTGCAAACAATAATGAAAA]

[+] EMBL FR0055834            [TCTTCTGCCCGATGTTAAGGCCCGAAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGATAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTCAAAACATTAAAATCATAAAAAATTGCAAACAATAATGAAAA]
[+] EMBL FR0056767            [                                                                                CATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGATGACAAGCTGATCGCCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTC                                                                                                                                               ]




>consensus_2848#1
TCTTCTGCCCGATGTTAAGGCCCGAAATCCGGCGACTAGCACCCCCATTTTTAGGCATCC
AACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTAT
TTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGC
CCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGC
TCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGATAAGAAAGAGGAGAAGAAGGAAGA
GTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTG
TCAAAACATTAAAATCATAAAAAATTGCAAACAATAATGAAAA

consensusID : consensus_2848#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 389
fasta sequence

                              [TCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCACCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGAGGCGACCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGGTTAGTTTGGTGACCGGATATTATGGATCACATAGTCCTAACTGGACATCCCCCTGTATGCTTGTCAAT]

[+] EMBL FR0056788            [TCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCACCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGGTTAGTTTGGTGACCGGATATTATGGATCACATAGTCCTAACTGGACATCCCCCTGTATGCTTGTCAAT]
[+] EMBL FR0056719            [         TAGCACCCCCATTTTTAGGCATCCATCGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCACCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGCCGCTGGTGGAGGCGACCCGGCCGGACCTCCTGCTGCCGGTGCTCCTGCTGCTGGT                                                                               ]




>consensus_2848#2
TCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATC
TGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGA
TGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCACCGT
GGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCT
GATCTGCAACGTTGGAGCTGGTGGAGGCGACCCGGCCGGAGCTCCTGCTGCCGGAGCTCC
TGCTGCTGGTGATGCTCCAGGTTAGTTTGGTGACCGGATATTATGGATCACATAGTCCTA
ACTGGACATCCCCCTGTATGCTTGTCAAT

consensusID : consensus_2848#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence

                              [GTCACCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAATTGCCAAAGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGCCCCGGAACCAAATTTTTGGCCC]

[+] EMBL FR0056110            [GTCACCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAATTGCCAAAGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGCCCCGGAACCAAATTTTTGGCCC]
[+] EMBL CA846629             [                                                                                                           AGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTAAAATCATAAAAAA                                                                            ]




>consensus_2848#3
GTCACCGTGGAGCCTTTCTGGCCAAGTCTGTTTGCTAAGGCTCTGTCCAGCATCGACATC
GGCAGCCTGATCTGCAACGTTGGAGCTGGTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCC
GGAGCTCCTGCTGCTGGTGATGCTCCAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAG
GAAGAGTCTGAAGAGTCCGATGATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGT
TTTTGTAAAAACATTAAAATCATAAAAAATTGCCAAAGCCTTCAAAAAAAAAAAAAAAAA
AAAAAAAAAACCCCCGGGGGGGCCCCGGAACCAAATTTTTGGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2848#0      CTAAGGTGCTTGGTTCTTCTGCCGAAGCTAAGGCCCCGAATCCGGCGACTAGCACCCCCA 60
consensus_2848#3      ------------------------------------------------------------
consensus_2848#1      ------------------------------------------------------------
consensus_2848#2      ------------------------------------------------------------
                                                                                  

consensus_2848#0      TTTTTAGGCATCCAACGCGATAAACGTGAGATACATCATCTGAAATGGCCTCCGTGTCCG 120
consensus_2848#3      ------------------------------------------------------------
consensus_2848#1      ----------------------------------------TCTTCTGCCCGATGTTAAGG 20
consensus_2848#2      ------------------------------------------------------------
                                                                                  

consensus_2848#0      AGCTCGCCTGTATTTACTCCGCTCTGATCCTCCACGACGATGAAGTCACCGTCACCGAGG 180
consensus_2848#3      ------------------------------------------------------------
consensus_2848#1      CCCGAAATCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATA 80
consensus_2848#2      -------TCCGGCGACTAGCACCCCCATTTTTAGGCATCCAACGCGATAAACGTGAGATA 53
                                                                                  

consensus_2848#0      ACAAGCTGATCGCCCTGATCAAGGCTGCCGGAGTCACCGTGGAGCCT-TTCTGGCCAAGT 239
consensus_2848#3      --------------------------------GTCACCGTGGAGCCT-TTCTGGCCAAGT 27
consensus_2848#1      CATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCC 140
consensus_2848#2      CATCATCTGAAATGGCCTCCGTGTCCGAGCTCGCCTGTATTTACTCCGCTCTGATCCTCC 113
                                                      * *    *  *  *   ****  *    

consensus_2848#0      CTGTTTGCTAAGGCTCTGTC--CAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAG 297
consensus_2848#3      CTGTTTGCTAAGGCTCTGTC--CAGCATCGACATCGGCAGCCTGATCTGCAACGTTGGAG 85
consensus_2848#1      ACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCTGCAACGTTGGAG 200
consensus_2848#2      ACGACGATGAAGTCACCGTCACCGAGGACAAGCTGATCGCCCTGATCAAGGCTGCCGGAG 173
                        *      *** * * ***  *     * *  *   *  *******      *  ****

consensus_2848#0      CTG--GTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGC 355
consensus_2848#3      CTG--GTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGC 143
consensus_2848#1      CTG--GTGGCGGCGCCCCGGCCGGAGCTCCTGCTGCCGGAGCTCCTGCTGCTGGTGATGC 258
consensus_2848#2      TCACCGTGGAGCCTTTCTGGCCAAGTCTGTT--TGCTAAGGCTCTGTCCAGCATCGACAT 231
                           **** * *   * ****    **  *  ***    ****   *       **   

consensus_2848#0      TC-CAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATG 414
consensus_2848#3      TC-CAGCCAAGGCAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATG 202
consensus_2848#1      TC-CAGCCAAGGCAGAGGATAAGAAAGAGGAGAAGAAGGAAGAGTCTGAAGAGTCCGATG 317
consensus_2848#2      CGGCAGCCTGATCTGCAACGTTGGAGCTGGTGGAGGCG-ACCCGGCCGGAGCTCCTGCTG 290
                         *****    * *       * *   ** * **  * *   * * * **   * * **

consensus_2848#0      ATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTA-AAATC 473
consensus_2848#3      ATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTAAAAACATTA-AAATC 261
consensus_2848#1      ATGACATGGGCTTTGGTCTCTTTGATTAAAGTGGATGTTTTTGTCAAAACATTA-AAATC 376
consensus_2848#2      CCGGAGCTCCTGCTGCTGGTGATGCTCCAGGTTAGT-TTGGTGACCGGATATTATGGATC 349
                        *          ** *     ** *  * **   * **  **     * ****   ***

consensus_2848#0      ATAAAA----AAT-------------AGAAAAAAAAAAAAGA-----------------G 499
consensus_2848#3      ATAAAA----AATTGCCAAAGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGG 317
consensus_2848#1      ATAAAA----AATTGC----------AAACAATAATGAAAA------------------- 403
consensus_2848#2      ACATAGTCCTAACTGGACATCCCCCTGTATGCTTGTCAAT-------------------- 389
                      * * *     **                *        **                     

consensus_2848#0      GGGGGGCCCGGTACCCAGTTTTTGTCCCC 528
consensus_2848#3      GGGGGCCCCGGAACCAAATTTTTGGCCC- 345
consensus_2848#1      -----------------------------
consensus_2848#2      -----------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)