These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 423 fasta sequence [CATCATAGAAAGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG-GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC-A-AAANA-A-AAAAAAAAAACCCCGGGGGGGGCCCGGGTCCCAAGTTTTGGCCCCCTTTATGGGG] [-] EMBL CA588742 [CATCATAGAAAGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACAT ] [+] EMBL FR0057833 [ AGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A AAATG A GGAAAAAAAACCCCGGGGGGGGCCCGGGAACCAACTTTTGGC ] [+] EMBL FR0057580 [ ATGGCTATCCGCTACCCCATGGCCATCGGTCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATA ] [+] EMBL CA329879 [ CTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ] [+] EMBL CA844468 [ CTATCCGCTACCCCATGGCCATCGGCCTGAGTAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ] [+] EMBL CA845392 [ CTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ] [+] EMBL CA330930 [ GCTACCCCATGGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ] [+] EMBL CA845594 [ TACCCCATGGCCATCGGCCTGAGTAAAGGCCACCTGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAAC ] [+] EMBL CA845421 [ TGGCCATCGGCCTGAATAAAGGCCACCCGGCCCCTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAATATAACTAGATAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGATAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACNC G AAAAA ] [+] EMBL FR0057606 [ GGCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A AAANAGG AAAAAAAAAACCCCAGGGGGGGCCCGGTTCCCAATTTT ] [+] EMBL FR0057664 [ GCCATCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A NNANA N NAAAAAAAACCCCCGGGGGGGGCCCGGTTCCCAATTTTTG ] [+] EMBL FR0055215 [ TCGGCCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A AGAGA AGAAAAAAAAAACCCCGGGGGGGGGCCGGGTCCCAACTTTTGGCCCCCTTTATGGGG] [+] EMBL FR0057637 [ CCTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A GATGG A AGAAGGAAACTCCCGGGGGGGGCCCCGTTCCCAAGTTTTGGCCC ] [+] EMBL CA845579 [ CCTGAATAAAGGCCACCCGGTCAC CTTAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ] [+] EMBL FR0057633 [ CTGAATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAGCACAGCAGGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAGGAAGAGGATTG GGACTCACATTAGGGCTAAGAGAAGGAGAGAGGAGCTCAGCAGCGTTCTGGGTGCCATGAGGAAAGCTGCTGCCAGGAAAGACTGAGCTGTTAATAA ] [+] EMBL FR0055355 [ AATAAAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC ANNATGT G AAAAAAAAAACCTCAGGGGGGGCCCGGGACCCCAGTTTTGGC ] [+] EMBL FR0057585 [ AAGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A ANNNA A NTTAAAAAACCCCCGGGGGGGGCCCCG ] [+] EMBL FR0057746 [ AGGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A ATTGG G TACAAAAAAACCCCGGGGGGGGCCCCGG ] [+] EMBL FR0056367 [ GGCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A CGATG G GGATCAAAggaa ] [+] EMBL FR0056534 [ GCCACCCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGGATCAAAGGACAAGAG ] [+] EMBL FR0056015 [ CCGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A TAATA C AAAAAGAAA ] [+] EMBL CA845070 [ CGGTCACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC N AAAAA ] [+] EMBL CA330629 [ CACTAAAAATGTAACTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACTTTATGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ] [+] EMBL FR0056898 [ GCTCCCAACCACAGCCGCCGACGTGGGCGTCTGACTAAACACAGCAGGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGAGAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACAC A NAANA N ANAAAAAAAACCCCGAGGGGGGGCCCGTTACCAAGTTTTGGGCC ] [-] EMBL FR0055876 [ ccTGCTCCTTATGAGAGGCGACCCATGGAGCTGCTGAAGGTATCAAAGGACACGAGGCCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGC ] [+] EMBL CA333434 [ GACAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ] [+] EMBL CA845095 [ CAAGAGGGCTCTGAAGTTCATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACA ] [+] EMBL CA333372 [ ATCAAGAAGAGGATTG GCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAA ] [+] EMBL CA845512 [ GATTGCCCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ] [+] EMBL FR0056294 [ TCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCTGGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAACACAA AAAAA A AAAAAAAAAACCCCAGGGGGGGCCCGGGTACCAACTTTTGGTCC ] [+] EMBL CA330466 [ GGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA ] consensusID : consensus_2867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 72 fasta sequence [GAGTGCCAATCCTCTTCTTGATGAACTTCAGAGCCCTCTTGTCCTTTGATACCTTCAGCCTCGTGCCGAATT] [+] EMBL CA588786 [GAGTGCCAATCCTCTTCTTGATGAACTTCAGAGCCCTCTTGTCCTTTGATACCTTCAGCCTCGTGCCGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2867#0 CATCATAGAAAGCAGACATGGCTATCCGCTACCCCATGGCCATCGGCCTGAATAAAGGCC 60 consensus_2867#1 ---------------GAGTGCCAATCCTCTTCTTGATGAACTTCAG---------AGCCC 36 ** * **** ** * *** * ** * ** ** consensus_2867#0 ACCCGGTCACTAAAAATGTAA--CTGCTCCCAAACACAGCCGCCGACGTGGGCGTCTGAC 118 consensus_2867#1 TCTTGTCCTTTGATACCTTCAGCCTCGTGCCGAATT------------------------ 72 * * * * * * * * ** * ** ** consensus_2867#0 TAAACACAGCAAGTTCATTCGCGACATGATCCGCGATGTTTGTGGTTTTGCTCCTTATGA 178 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 GAGGCGAGCCATGGAGCTGCTGAAGGTATCAAAGGACAAGAGGGCTCTGAAGTTCATCAA 238 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 GAAGAGGATTGGCACTCACATTAGGGCTAAGAGAAAGAGAGAGGAGCTCAGCAACGTTCT 298 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 GGCTGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGATCTGTTAATAAAGACTGTCCAAA 358 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 CACAAAANAAAAAAAAAAAACCCCGGGGGGGGCCCGGGTCCCAAGTTTTGGCCCCCTTTA 418 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 TGGGG 423 consensus_2867#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |