These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAACGCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTTCTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAACGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACACCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTAAATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT] [+] EMBL CA846003 [CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAACGCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTTCTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAACGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACACCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTAAATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT] consensusID : consensus_307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTGCAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCAGAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCACAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATGTAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCGCTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG] [+] EMBL CA330562 [TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTGCAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCAGAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCACAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATGTAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCGCTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_307#0 CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAAC 60 consensus_307#1 ------------------------------------------------------------ consensus_307#0 GCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTT 120 consensus_307#1 ------------------------------------------------------------ consensus_307#0 CTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAA 180 consensus_307#1 ----------------------------------------------------------TT 2 consensus_307#0 CGCTGCTTGCC--CAAGTGTC-CACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCA 237 consensus_307#1 TGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCC 62 **** **** *** **** ***** * *** ** ***** ** ** * consensus_307#0 GGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTG 297 consensus_307#1 G---TTGCCAGAGAGAGGTTAGCTGTG----GGACTGGCTA-CGAACTCACTGATAATAA 114 * * ****** * ** * ****** * * * * ** ** * consensus_307#0 GGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACA 357 consensus_307#1 CAACT-GCAAAGATATTGACGAGAGTGAG-ACTGGAATCCATAACTGC-GGCCAGGATTT 171 * *** ** * * * *** **** ** * * *** ** * consensus_307#0 TGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCA 417 consensus_307#1 TGCGTGCCA-------GAACACG---------CAGGGATCATTCCGCTGTCTCCCGAAGG 215 ** * *** **** * ** ***** * * * consensus_307#0 ACACCTGCGAGACCAAGACTA-CAAAGATGTGCTGCGACTGT-TGTCTTCTGGGGAAGGT 475 consensus_307#1 TCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAAT 275 ** ** * * * * * * **** ** * * * ** * * consensus_307#0 GGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCA 535 consensus_307#1 GTGTCAGTCACACGAGC--CCATGCCAC----AGAGGGCAGATGTGTATCAACACCGTCG 329 * *** *** * ** *** ** * * * * ** * * * * * consensus_307#0 GGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCA 595 consensus_307#1 GCT--CCTACAACTGT----CAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCA 383 * * ** * ** *** *** ** * * * * *** ** consensus_307#0 AACTAAATTGCCAGCCCAGGA-TGATACAGATAAAAATGGAGATAACTCAGTTCTGACTG 654 consensus_307#1 GCGAAGATGGCAAACGATGCACTGATATTGACGAA--TGTAAAAACCCCGAGAATGTTTG 441 * ** ** * * * * ***** ** ** ** * * * * * ** ** consensus_307#0 ATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCG 714 consensus_307#1 TCTCGGTCACGGCTGCATCAACATGG-------TGGGCTCTTATCGCTGTGAGTGTCAGG 494 * ** * * * ** * ***** * ** * *** * consensus_307#0 ACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGA 774 consensus_307#1 CTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACT 554 ****** **** * * ***** ** ** ** ** ** ** consensus_307#0 GTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT 827 consensus_307#1 ATCCTGGTCGTCTTTGTGCCCACAAGTG-TGAAAACACTCTG----------- 595 * * * * *** ** * ** * ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |