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Takifugu rubripes
cluster # 307 cluster # 307       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_307#0 length = 827 sequences # 1  
consensus_307#1 length = 595 sequences # 1  

consensusID : consensus_307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 827
fasta sequence
                              [CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAACGCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTTCTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAACGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACACCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTAAATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT]

[+] EMBL CA846003             [CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAACGCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTTCTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAACGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACACCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTAAATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT]


>consensus_307#0 CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAAC GCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTT CTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAA CGCTGCTTGCCCAAGTGTCCACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCAGGG ATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTGGGT CCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACATGT GCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCAACA CCTGCGAGACCAAGACTACAAAGATGTGCTGCGACTGTTGTCTTCTGGGGAAGGTGGCTC ATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCAGGTGT CCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCAAACTA AATTGCCAGCCCAGGATGATACAGATAAAAATGGAGATAACTCAGTTCTGACTGATGAGT GCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCGACGGCT ACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGAGTGCCA GCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT



consensusID : consensus_307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTGCAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCAGAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCACAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATGTAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCGCTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG]

[+] EMBL CA330562             [TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTGCAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCAGAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCACAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATGTAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCGCTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG]


>consensus_307#1 TTTGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTT CCGTTGCCAGAGAGAGGTTAGCTGTGGGACTGGCTACGAACTCACTGATAATAACAACTG CAAAGATATTGACGAGAGTGAGACTGGAATCCATAACTGCGGCCAGGATTTTGCGTGCCA GAACACGCAGGGATCATTCCGCTGTCTCCCGAAGGTCAAGTGTGGCGCAGGGTTCATCCA GGATGCCCTTGGCCAATGCATCGACATCAATGAATGTGTCAGTCACACGAGCCCATGCCA CAGAGGGCAGATGTGTATCAACACCGTCGGCTCCTACAACTGTCAGAGGAACTCTGTTAC CTGTGGCCGAGGATATCACCTCAGCGAAGATGGCAAACGATGCACTGATATTGACGAATG TAAAAACCCCGAGAATGTTTGTCTCGGTCACGGCTGCATCAACATGGTGGGCTCTTATCG CTGTGAGTGTCAGGCTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAA CGAATGCAGGCACTATCCTGGTCGTCTTTGTGCCCACAAGTGTGAAAACACTCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_307#0      CTCCTTCCATGAATCATCGGACTCCGTCTGCGTTGATTACAGGACTTCTGAGGTTCAAAC 60
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      GCATTCAGCAGAATATCAAAAGCTTGAAATACTCGGACACCTTTCTTTGTTCACTTTTTT 120
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      CTCTCCTAATCGGTCATTCAATGGATCTGCGCGTAGTGCTGCTGTGCGCTCTGTTCGAAA 180
consensus_307#1      ----------------------------------------------------------TT 2
                                                                                 

consensus_307#0      CGCTGCTTGCC--CAAGTGTC-CACAGGAGGAGAGCAGATCTCCATAGAGGACTGCTGCA 237
consensus_307#1      TGCTGAGTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTCC 62
                      ****  ****  *** ****    *****    *   ***  ** ***** ** ** * 

consensus_307#0      GGGATGGCCAGAAACGGGCCAAAAACAACGAGGACTGCTCGTCCATCCCGCTCATCTTTG 297
consensus_307#1      G---TTGCCAGAGAGAGGTTAGCTGTG----GGACTGGCTA-CGAACTCACTGATAATAA 114
                     *   * ****** *  **  *          ******     * * * * ** **  *  

consensus_307#0      GGTCCAGCACGTGCATGGCGGTGCAGGAGCACTGCTGTCTAGCAGTGCTGGTTTATAACA 357
consensus_307#1      CAACT-GCAAAGATATTGACGAGAGTGAG-ACTGGAATCCATAACTGC-GGCCAGGATTT 171
                        *  ***     ** *  * *   *** ****   ** *  * *** **     *   

consensus_307#0      TGTGCACCACTGGCATCAACATGGCCAAAAACCAAGGATCCTGTGATTCCTTATTCGGCA 417
consensus_307#1      TGCGTGCCA-------GAACACG---------CAGGGATCATTCCGCTGTCTCCCGAAGG 215
                     ** *  ***        **** *         ** ***** *     *   *        

consensus_307#0      ACACCTGCGAGACCAAGACTA-CAAAGATGTGCTGCGACTGT-TGTCTTCTGGGGAAGGT 475
consensus_307#1      TCAAGTGTGGCGCAGGGTTCATCCAGGATGCCCTTGGCCAATGCATCGACATCAATGAAT 275
                      **  ** *   *   *   * * * ****  **  * *  *   **  *         *

consensus_307#0      GGCTCATGAACAGAGTCTACCGTGCGACCACAACCTGTCTGTTGGGCACCGGTGTGGCCA 535
consensus_307#1      GTGTCAGTCACACGAGC--CCATGCCAC----AGAGGGCAGATGTGTATCAACACCGTCG 329
                     *  ***   ***    *  ** *** **    *   * * * ** * * *      * * 

consensus_307#0      GGTGTCCCGGGATTGCTGTGCAGCCGAAGTCCAGCTCAACCAGACCACACCGACACTGCA 595
consensus_307#1      GCT--CCTACAACTGT----CAGAGGAACTCTGTTACCTGTGGCCGAGGATATCACCTCA 383
                     * *  **    * **     ***  *** **     *     * * *      ***  **

consensus_307#0      AACTAAATTGCCAGCCCAGGA-TGATACAGATAAAAATGGAGATAACTCAGTTCTGACTG 654
consensus_307#1      GCGAAGATGGCAAACGATGCACTGATATTGACGAA--TGTAAAAACCCCGAGAATGTTTG 441
                         * ** ** * *   * * *****  **  **  ** * * * * *     **  **

consensus_307#0      ATGAGTGCAAAGGGGTGTGCGCACAGCGCTGCGTGGGCAACGACACGTGCGGCTGTTTCG 714
consensus_307#1      TCTCGGTCACGGCTGCATCAACATGG-------TGGGCTCTTATCGCTGTGAGTGTCAGG 494
                         *  **  *  *  *   **  *       *****    *    ** *  ***   *

consensus_307#0      ACGGCTACAAACTTAAACCGGACGAAAAGACCTGTGAAGACATCAATGAGTGTTTGCTGA 774
consensus_307#1      CTGGCTACGTCTTTAACAGCATCAGGCGGTTATGTGAGGATATAAACGAATGCAGGCACT 554
                       ******    ****      *     *   ***** ** ** ** ** **   **   

consensus_307#0      GTGCCAGCAACTGTCGTGGAGGAGAGCGGTGCATCAACACAGAGGGCTCCTTT 827
consensus_307#1      ATCCTGGTCGTCTTTGTGCCCACAAGTG-TGAAAACACTCTG----------- 595
                      * *  *      * ***      ** * ** *   ** * *           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)