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Takifugu rubripes
cluster # 318 cluster # 318       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_318#0 length = 605 sequences # 1  
 consensus_318#1 length = 564 sequences # 1  
consensusID : consensus_318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence 
                              [GGACTGCGCTCGCTCAGACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACATGGACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGCTCTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGGTGACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCTGGTGGAGCTGCTCGGCATCATCCAGCGCACTAAGCTGCTCCGGGATCACAATCTCCCCCGTACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGGAGCTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTGGAAAACTGGAGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTCATCAGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTGCTAGAAAAAATCAACCAGTTCAATGCACAGAACTCAGCAATGAATCATGGATTGGTGGCTCAGGAAAC]

[+] EMBL CA591031             [GGACTGCGCTCGCTCAGACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACATGGACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGCTCTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGGTGACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCTGGTGGAGCTGCTCGGCATCATCCAGCGCACTAAGCTGCTCCGGGATCACAATCTCCCCCGTACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGGAGCTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTGGAAAACTGGAGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTCATCAGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTGCTAGAAAAAATCAACCAGTTCAATGCACAGAACTCAGCAATGAATCATGGATTGGTGGCTCAGGAAAC]




>consensus_318#0
GGACTGCGCTCGCTCAGACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACATG
GACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGCT
CTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGGT
GACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCTG
GTGGAGCTGCTCGGCATCATCCAGCGCACTAAGCTGCTCCGGGATCACAATCTCCCCCGT
ACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGGAG
CTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTGGA
AAACTGGAGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTCATC
AGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTGCTA
GAAAAAATCAACCAGTTCAATGCACAGAACTCAGCAATGAATCATGGATTGGTGGCTCAG
GAAAC

consensusID : consensus_318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence 
                              [CTCAGCAATGAATCATGGATTGGTGGCTCAGGAAACAGGCCGACCAATAGCTGAAACGGACCCCCAGCAGTCTACAGAGGTACGATCTTTTAATCTGCCTCCATCTCAGTGCTGCAGTGTTCAACACGCCTGCTGTGTGTCACATTTTAACCAGATGCCCTCTTTTAACCGCTGCGTCTCTGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAACAATTGAGGAAATGTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGGATATTTGGGTGTCAACCATTGGACACATGCAGAAGTTCTTTATTTTTGTTGTGGAACCCTAATGTATTTTTCTTCCCCCCTCTTTGGAATAATTTAGCCATAACAGAGGTAAGAACCTGTTATTTAAGCTTTATACCAAAGAAATCTTTACATTGTAATTGCATCATGCTTATATTTCCTCGCAGTCGTGCTCTTTCAACACCCTGCAGGGTGAGTGCTGTATTCGTTGTTTTTGTCAGACCTTTCTGTTTTAAGTGAGCCTGTCCTGAGTCCTCCT]

[+] EMBL CA330637             [CTCAGCAATGAATCATGGATTGGTGGCTCAGGAAACAGGCCGACCAATAGCTGAAACGGACCCCCAGCAGTCTACAGAGGTACGATCTTTTAATCTGCCTCCATCTCAGTGCTGCAGTGTTCAACACGCCTGCTGTGTGTCACATTTTAACCAGATGCCCTCTTTTAACCGCTGCGTCTCTGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAACAATTGAGGAAATGTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGGATATTTGGGTGTCAACCATTGGACACATGCAGAAGTTCTTTATTTTTGTTGTGGAACCCTAATGTATTTTTCTTCCCCCCTCTTTGGAATAATTTAGCCATAACAGAGGTAAGAACCTGTTATTTAAGCTTTATACCAAAGAAATCTTTACATTGTAATTGCATCATGCTTATATTTCCTCGCAGTCGTGCTCTTTCAACACCCTGCAGGGTGAGTGCTGTATTCGTTGTTTTTGTCAGACCTTTCTGTTTTAAGTGAGCCTGTCCTGAGTCCTCCT]




>consensus_318#1
CTCAGCAATGAATCATGGATTGGTGGCTCAGGAAACAGGCCGACCAATAGCTGAAACGGA
CCCCCAGCAGTCTACAGAGGTACGATCTTTTAATCTGCCTCCATCTCAGTGCTGCAGTGT
TCAACACGCCTGCTGTGTGTCACATTTTAACCAGATGCCCTCTTTTAACCGCTGCGTCTC
TGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAACAATTGAGGAAAT
GTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGGATATTTGGGTGTC
AACCATTGGACACATGCAGAAGTTCTTTATTTTTGTTGTGGAACCCTAATGTATTTTTCT
TCCCCCCTCTTTGGAATAATTTAGCCATAACAGAGGTAAGAACCTGTTATTTAAGCTTTA
TACCAAAGAAATCTTTACATTGTAATTGCATCATGCTTATATTTCCTCGCAGTCGTGCTC
TTTCAACACCCTGCAGGGTGAGTGCTGTATTCGTTGTTTTTGTCAGACCTTTCTGTTTTA
AGTGAGCCTGTCCTGAGTCCTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_318#0      GGACTGCGCTCGCTCA-GACTCGCTGAAAACCTCTGTCCAAACAGGCCGGGGTGCAACAT 59
consensus_318#1      -CTCAGCAATGAATCATGGATTGGTGGC--TCAGGAAACAGGCCGACCAATAGCTGAAAC 57
                        * **  *   *** *  * * **     *      **  * * **        * * 

consensus_318#0      GGACTTCCAGGCGCGCCTCTTGAAGGTAGGCAATGACCTGCGGAAGGATGAGGTGCGAGC 119
consensus_318#1      GGACCCCCAG---CAGTCTACAGAGGTA--CGATCTTTTAATCTGCCTCCATCTCAGTGC 112
                     ****  ****   *         *****  * **    *           *  *  * **

consensus_318#0      TCTGGTCTTTCTCTGCTCCGACATCCTGGGCTGCAACCCGGCCGCGGTGCAGTCGGCCGG 179
consensus_318#1      TGCAGTGTT---CAACACGCCTGCTGTGTGTCACATTTTAACCA-GATGCCCTCTTTTAA 168
                     *   ** **   *  * *        ** *   **      **  * ***  **      

consensus_318#0      TGACCTCTTCTCCCGCCTGTCCGACCAGGACCACCTCTCCGAGGAGCAGCCCCACCTGCT 239
consensus_318#1      CCGCTGCGTCTCTGCTGGAGCAGGTAAGAAGTTTTCATCTGTGTTTTTGTTTAATTTAAC 228
                        *  * ****        * *   ** *       ** * *     *    *  *   

consensus_318#0      GGTGGAGCTGCTCGGCATCATCCAGCGCACTAAGC-TGCTCCGGGATCACAATCTCCCCC 298
consensus_318#1      AATTGAGGAAAT-GTTTCTAGATGACACACAAAGTGTGATGATAAATAGCTAGCATGCGG 287
                       * ***    * *     *     * *** ***  ** *     **  * * *   *  

consensus_318#0      GTACTGGAGCGCAGGACCTCATCTCCCCTTACAGGAAGCTGCTGTACTCTCTGTCTGAGG 358
consensus_318#1      ATATTTGGGTGTCAACCATTGG--ACACATGCAGAAG--TTCTTTATTTTTGTTGTGGAA 343
                      ** * * * *     * *      * * * *** *   * ** ** * *   * **   

consensus_318#0      AGCTGACTGCTGATGACTTGAAGGACATAAAGTTCCTGTTAAACAATAAACTTCCACGTG 418
consensus_318#1      CCCTAATGTATTTTTCTTCCCCCCTCTTTGGAATA--ATTTAGCCATAA---CAGAGGTA 398
                       ** *    *  *   *       * *     *    ** * * ****      * ** 

consensus_318#0      GAAAACTGG-AGGAAGTTACAACACTGGAGGTCTTCATGGAGCTGGAACACAGGGCCCTC 477
consensus_318#1      AGAACCTGTTATTTAAGCTTTATACCAAAGAAATCTTTACATTGTAATTGCATCATGCTT 458
                       ** ***  *   *      * **   **   *   *  *     *   **     ** 

consensus_318#0      ATCAGTGACACTGACCTCGGGTTCCTGGAGAGCATCATTCAACCAGTCTGCCCAGTGCTG 537
consensus_318#1      AT--ATTTCCTCGCAGTCGTGCTCTTTCAA--CACCCTGCAG--GGTGAGTGCTGTATTC 512
                     **   *  *   *   *** * ** *  *   ** * * **    **  *  * **  * 

consensus_318#0      CTAGAAAAAATCAACCAGTTCAATGCACAG-AACTCAGCAATGAATCATGGATTGGTGGC 596
consensus_318#1      GTTGTTTTTGTCAGACCTTTCTGTTTTAAGTGAGCCTGTCCTGAGTCCTCCT-------- 564
                      * *      ***  *  ***  *    **  *  * *   *** ** *           

consensus_318#0      TCAGGAAAC 605
consensus_318#1      ---------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)