cluster # 319

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 319 cluster # 319 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_319#0 length = 367 sequences # 1

consensus_319#1 length = 320 sequences # 1

consensusID : consensus_319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAGCCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAATCCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGCCCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGATGCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGAGCAGCGAACCCGGGAGGTCATCTGCATTGATGACTAG]

[+] EMBL FR0063433            [CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAGCCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAATCCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGCCCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGATGCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGAGCAGCGAACCCGGGAGGTCATCTGCATTGATGACTAG]




>consensus_319#0
CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAG
CCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAAT
CCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGC
CCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGAT
GCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCG
GGAGGCAGAGTTCCTACACAGTCGGCGGGAGCAGCGAACCCGGGAGGTCATCTGCATTGA
TGACTAG

consensusID : consensus_319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [ATGCTTTGGAACGTCCAACGGGAGTTACAAGTGAAAAGGAGATTCTATTAAGGAATGTCTTTGTTCGCTTTACATGATGGGGCAAATGGTTCCTTCTGACATCCGCATACCTTTAGCAAACCTTCCATTTACTTGATGCTGCTGCATATTTGGCACATTCACACACTTGCCATTAATGGTGTCTCACTGTTGTGTTCCTCCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATTGATGACTAGGGCCGAATGCA]

[+] EMBL FR0060192            [ATGCTTTGGAACGTCCAACGGGAGTTACAAGTGAAAAGGAGATTCTATTAAGGAATGTCTTTGTTCGCTTTACATGATGGGGCAAATGGTTCCTTCTGACATCCGCATACCTTTAGCAAACCTTCCATTTACTTGATGCTGCTGCATATTTGGCACATTCACACACTTGCCATTAATGGTGTCTCACTGTTGTGTTCCTCCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCGGGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATTGATGACTAGGGCCGAATGCA]




>consensus_319#1
ATGCTTTGGAACGTCCAACGGGAGTTACAAGTGAAAAGGAGATTCTATTAAGGAATGTCT
TTGTTCGCTTTACATGATGGGGCAAATGGTTCCTTCTGACATCCGCATACCTTTAGCAAA
CCTTCCATTTACTTGATGCTGCTGCATATTTGGCACATTCACACACTTGCCATTAATGGT
GTCTCACTGTTGTGTTCCTCCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCG
GGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATT
GATGACTAGGGCCGAATGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_319#0      CTATCCAGAGTGCCGCCCATTGCCGCCCGCCTGCGAAATGTCGGAGAGGAGCATCCTCAG 60
consensus_319#1      --------------------------ATGCTT-TGGAACGTCCAACGGGAGT---TACAA 30
                                                 ** *  * ** ***  *  ****      ** 

consensus_319#0      CCGACTGGCCAGCAAGGGCACCGAGACGCACACGCCCCCGGTCAGCAGCCTGTTTCAAAT 120
consensus_319#1      GTGAAAAG---GAGATTCTATTAAGGAATGTCTTTGTTCGCTTTACATGATGGGGCAAAT 87
                       **   *   *  *    *   **             ** *   **   **   *****

consensus_319#0      CCACGCACCTTTATACCCCATACCTCCAGGACCTTACGCAACCAATCAGAACTACGGTGC 180
consensus_319#1      GGTTCCTTCTGACATCCGCATACCTTTAGCAAACCTTCCATTTACTTGATGCTG------ 141
                          *  **     ** *******  ** *       **   * *     **       

consensus_319#0      CCCCTTCACCCCTGCCCCACCCAGTGCCCTCCACATGGGAGGGGCCAACTACAGCCAGAT 240
consensus_319#1      ---CTGCATATTTGGCACATTCA-CACACTTGCCATTAATGGTGTC--TCACTGTTGTGT 195
                        ** **    ** * **  **   * **   ***    ** * *    ** *     *

consensus_319#0      GCCTCCTGGATCCTTCATATCAGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAGGAGCG 300
consensus_319#1      TCCTCC---------------AGTGTTGAACGGGCCTCCCATGTCCGTGAAGAAAGAGCG 240
                      *****               ********************************* *****

consensus_319#0      GGAGGCAGAGTTCCTACACAGTCGGCGGG-AGCAGCGAACCCGGG-AGGTCATCTGCATT 358
consensus_319#1      GGAGGCAGAGTTCCTACACAGTCGGCGGGGAGCAGCGAACCCGGGGAGGGCATCTGCATT 300
                     ***************************** *************** *** **********

consensus_319#0      GATGACTAG----------- 367
consensus_319#1      GATGACTAGGGCCGAATGCA 320
                     *********

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)