These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGTACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAGAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA] [+] EMBL FR0057562 [TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGTACCAGAGGAGGGGGACAGGAAGTACCTGAAAGACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAAGAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA] consensusID : consensus_335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGGACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT] [+] EMBL CA330853 [GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGAACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATCTGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGCGCTAGAACCAGGAGGTGGACTGATAACGCAACTCTCCCAGCTTAAGAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCGAGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTCAACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_335#0 TTTGCAGAGACAGAAGATTTTGGGGATTTATAGAGAAATGCTGAGGACGATACGTCAAGT 60 consensus_335#1 ------------------------------------------------------------ consensus_335#0 ACCAGAGGAGGGGGACAGGAAGTAC-CTGAAAGACTGGGCCAGAGACGAGTTCAAACGGA 119 consensus_335#1 -----------------GGAAGTATTCTGACCCACTGGGCCAGAGACGAGTTCAAACGGA 43 ******* **** *************************** consensus_335#0 ACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAGGCCAACAACCATC 179 consensus_335#1 ACAAGAGCGTCACAAACCAGGATGCTGTTCGCATGATGATCACACAAGCCAACAACCATC 103 ********************************************** ************* consensus_335#0 TGGAGGAGCTGAAGAAGTCTCTGGCCTTGGGCAAGAGTTAAGCATTGACCCGGGAGGTGC 239 consensus_335#1 TGGAGGAGCTGAAGAAGTCTCTGGCCTTGGCCAAGAGTTAAGCATTGACCCGGGAGGTGC 163 ****************************** ***************************** consensus_335#0 GCTAGAACCAGGAGGTGCACTGGATCCTGTTGGACTGATAACGCAGCTCTCCCAGCTTAA 299 consensus_335#1 GCTAGAACCAGGAGGTG---------------GACTGATAACGCAACTCTCCCAGCTTAA 208 ***************** ************* ************** consensus_335#0 GAAGCCTTCAGAAGTGCTGCTGCCGATGTCGCTCCATTTGTCCCTGCCTTAGCGTCACCG 359 consensus_335#1 GAATTTTTCTTAAGTGCTGCTGCCGATGTCGCTCCATTTGTCTCTGCGTGAGCGTCACCG 268 *** *** ******************************* **** * ********** consensus_335#0 AGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGGGGA------------------- 400 consensus_335#1 AGCACGAGCACCTAGAGGAGGGACTATTGTCCACTGGTGGATTCTCCCCTGTGAGTGTTC 328 ************************************* *** consensus_335#0 ------------------------------------- consensus_335#1 AACTGGAGGAGATAAAGAAACATCAATAAAGTAAAAT 365 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |