These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [ACAAGAATACAAGAATCATACGATATATGAAATTTGCTACAACATAATGATTTTCAAAGTGTGATTTTTAAGTTCTGATAGAATCAATTCTAAATGAATGTCTTTTTTTTAAATCATGCTTAATTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCAGCGGCTTCATCGGCGCGTCTCTGTGCAGGCAACCCGAGGTGGGGAGCCAGCAGGACCCCTCCTCCGTCAGCAGGATCTGTCACAACTAGGTCAAATTTGGAAGCTTGGAAGGATTCCATCAACTCTTTACTCTCAAAAGTGTATAATCACTTCACATGTTTTCCTGTGCAATTCATAGAAGCTGTATTTCAATCTTGACAACTTGTTATGCTGAAATGTGTCGTTTTCCCTGACAGCAACGTTGAGTGTGATGGTCTAGTAATGTAGAGATGTTTGGCTGATGTACCAGCTGTCCGCAGCCTGGATCACCATCACCTTGTGCAGCTCCTCAACCAGGACCCT] [+] EMBL CA588793 [ACAAGAATACAAGAATCATACGATATATGAAATTTGCTACAACATAATGATTTTCAAAGTGTGATTTTTAAGTTCTGATAGAATCAATTCTAAATGAATGTCTTTTTTTTAAATCATGCTTAATTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCAGCGGCTTCATCGGCGCGTCTCTGTGCAGGCAACCCGAGGTGGGGAGCCAGCAGGACCCCTCCTCCGTCAGCAGGATCTGTCACAACTAGGTCAAATTTGGAAGCTTGGAAGGATTCCATCAACTCTTTACTCTCAAAAGTGTATAATCACTTCACATGTTTTCCTGTGCAATTCATAGAAGCTGTATTTCAATCTTGACAACTTGTTATGCTGAAATGTGTCGTTTTCCCTGACAGCAACGTTGAGTGTGATGGTCTAGTAATGTAGAGATGTTTGGCTGATGTACCAGCTGTCCGCAGCCTGGATCACCATCACCTTGTGCAGCTCCTCAACCAGGACCCT] consensusID : consensus_347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [GTTTTACAATGTTTTTATTTTAATACACCATTAATCACACAACATGTGAAATTTGCTGGTAGATAATAATTTTTCAAGTTTGACTTCTAAGTTCTGATAGAATCAATTCTGAATGAATTACTTTTTTTTAATCACGCTTACTTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCATCGGCTTTATCGGCTTGTCTCTGTGCAGTCTGGAGAGCCTCTGCATGTTCATCCTGTAGGAGGGATCGTTCAAAACTCTCTTCACAGCTGCCAGGAAGTTGTCGTCCTTGTCCACAGTCCTAAGGCTCAGAATCTCAGCTCCTCCTCTCTCTTTCAGACGCAGCAGGTTGTCATATTGGTCAAAAAACACAGGTAGACCTACAACTGGGACTCCGTGATACATAGCTTCCTGAACTCCATTCGTTCCTCCGTGAAGCACAAACAGTTTTGTTTTGGGATGCCCTAAAAAATCATTCTGAGG] [+] EMBL CA331021 [GTTTTACAATGTTTTTATTTTAATACACCATTAATCACACAACATGTGAAATTTGCTGGTAGATAATAATTTTTCAAGTTTGACTTCTAAGTTCTGATAGAATCAATTCTGAATGAATTACTTTTTTTTAATCACGCTTACTTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCATCGGCTTTATCGGCTTGTCTCTGTGCAGTCTGGAGAGCCTCTGCATGTTCATCCTGTAGGAGGGATCGTTCAAAACTCTCTTCACAGCTGCCAGGAAGTTGTCGTCCTTGTCCACAGTCCTAAGGCTCAGAATCTCAGCTCCTCCTCTCTCTTTCAGACGCAGCAGGTTGTCATATTGGTCAAAAAACACAGGTAGACCTACAACTGGGACTCCGTGATACATAGCTTCCTGAACTCCATTCGTTCCTCCGTGAAGCACAAACAGTTTTGTTTTGGGATGCCCTAAAAAATCATTCTGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_347#0 -------------------ACAAGAATACAAGAATCATACGATATATGAAATTTGCTACA 41 consensus_347#1 GTTTTACAATGTTTTTATTTTAATACACCATTAATCACACAACATGTGAAATTTGCTGGT 60 ** * ** ***** ** * ** *********** consensus_347#0 ACATAATGATTTTCAAAGTGTGATTTTTAAGTTCTGATAGAATCAATTCTAAATGAATGT 101 consensus_347#1 AGATAATAATTTTTCAAGTTTGACTTCTAAGTTCTGATAGAATCAATTCTGAATGAATTA 120 * ***** ***** **** *** ** *********************** ******* consensus_347#0 CTTTTTTTTAAATCATGCTTAATTTTTGCTCTCACACATCTAGAACACAAGCATCGTACT 161 consensus_347#1 CTTTTTTTTAA-TCACGCTTACTTTTTGCTCTCACACATCTAGAACACAAGCATCGTACT 179 *********** *** ***** ************************************** consensus_347#0 AGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCT 221 consensus_347#1 AGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCT 239 ************************************************************ consensus_347#0 ACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCT 281 consensus_347#1 ACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCT 299 ************************************************************ consensus_347#0 TTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCAGCGGCTTCATCGGCGCG 341 consensus_347#1 TTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCATCGGCTTTATCGGCTTG 359 ******************************************* ****** ****** * consensus_347#0 TCTCTGTGCAGGCAACCCGAGGTGGGGAGCCAGCAGGACCCCTCCTCCGTCAGCAGGATC 401 consensus_347#1 TCTCTGTGCAGTC---------TGGAGAGCCT-CTGCATGTTCATCCTGTAGGAGGGATC 409 *********** * *** ***** * * * * ** * ***** consensus_347#0 TGTCACAACTAGGTCAAATTTGGAAGCTTGGAAGGATTCCATCAACTCTTTACTCTCAAA 461 consensus_347#1 GTTCAAAACTCTCTTCA---CAGCTGCCAGGAAGTTGTCGTCCTTGTCCACAGTC-CTAA 465 *** **** * * * ** ***** ** * ** * ** * ** consensus_347#0 AGTGTATAATCACTTCACATGTTTTCCTGTGCAATTCATAGAAGCTGT-ATTTCAATCTT 520 consensus_347#1 GGCTCAGAATCTCAGCTCCTCCTCTCTCTTTCAGACGCAGCAGGTTGTCATATTGGTCAA 525 * * **** * * * * * ** * ** * * *** ** * ** consensus_347#0 GACAACTTGTTATGCTGAAATGTGTCGTTTTCCCTGACAGCAACGTTGAGTGTGATGGTC 580 consensus_347#1 AAAACACAGGTAGACCTACAACTG--GGACTCCGTGATA-CATAGCTTCCTGAACTCCAT 582 * * * ** * * * ** * *** *** * ** * * ** * consensus_347#0 TAGTAATGTAGAGATGTTTGGCTGATGTACCAGCTGTCCGCAGCCTGGATCACCATCACC 640 consensus_347#1 TCGTTCCTCCGTGAAGC---ACAAACAGTTTTGTTTTGGGATGCCCTAA--AAAATCATT 637 * ** * ** * * * * * * * *** * * **** consensus_347#0 TTGTGCAGCTCCTCAACCAGGACCCT 666 consensus_347#1 CTGAGG-------------------- 643 ** * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |