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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[ACAAGAATACAAGAATCATACGATATATGAAATTTGCTACAACATAATGATTTTCAAAGTGTGATTTTTAAGTTCTGATAGAATCAATTCTAAATGAATGTCTTTTTTTTAAATCATGCTTAATTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCAGCGGCTTCATCGGCGCGTCTCTGTGCAGGCAACCCGAGGTGGGGAGCCAGCAGGACCCCTCCTCCGTCAGCAGGATCTGTCACAACTAGGTCAAATTTGGAAGCTTGGAAGGATTCCATCAACTCTTTACTCTCAAAAGTGTATAATCACTTCACATGTTTTCCTGTGCAATTCATAGAAGCTGTATTTCAATCTTGACAACTTGTTATGCTGAAATGTGTCGTTTTCCCTGACAGCAACGTTGAGTGTGATGGTCTAGTAATGTAGAGATGTTTGGCTGATGTACCAGCTGTCCGCAGCCTGGATCACCATCACCTTGTGCAGCTCCTCAACCAGGACCCT]
[+] EMBL CA588793 [ACAAGAATACAAGAATCATACGATATATGAAATTTGCTACAACATAATGATTTTCAAAGTGTGATTTTTAAGTTCTGATAGAATCAATTCTAAATGAATGTCTTTTTTTTAAATCATGCTTAATTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCAGCGGCTTCATCGGCGCGTCTCTGTGCAGGCAACCCGAGGTGGGGAGCCAGCAGGACCCCTCCTCCGTCAGCAGGATCTGTCACAACTAGGTCAAATTTGGAAGCTTGGAAGGATTCCATCAACTCTTTACTCTCAAAAGTGTATAATCACTTCACATGTTTTCCTGTGCAATTCATAGAAGCTGTATTTCAATCTTGACAACTTGTTATGCTGAAATGTGTCGTTTTCCCTGACAGCAACGTTGAGTGTGATGGTCTAGTAATGTAGAGATGTTTGGCTGATGTACCAGCTGTCCGCAGCCTGGATCACCATCACCTTGTGCAGCTCCTCAACCAGGACCCT]
consensusID : consensus_347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[GTTTTACAATGTTTTTATTTTAATACACCATTAATCACACAACATGTGAAATTTGCTGGTAGATAATAATTTTTCAAGTTTGACTTCTAAGTTCTGATAGAATCAATTCTGAATGAATTACTTTTTTTTAATCACGCTTACTTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCATCGGCTTTATCGGCTTGTCTCTGTGCAGTCTGGAGAGCCTCTGCATGTTCATCCTGTAGGAGGGATCGTTCAAAACTCTCTTCACAGCTGCCAGGAAGTTGTCGTCCTTGTCCACAGTCCTAAGGCTCAGAATCTCAGCTCCTCCTCTCTCTTTCAGACGCAGCAGGTTGTCATATTGGTCAAAAAACACAGGTAGACCTACAACTGGGACTCCGTGATACATAGCTTCCTGAACTCCATTCGTTCCTCCGTGAAGCACAAACAGTTTTGTTTTGGGATGCCCTAAAAAATCATTCTGAGG]
[+] EMBL CA331021 [GTTTTACAATGTTTTTATTTTAATACACCATTAATCACACAACATGTGAAATTTGCTGGTAGATAATAATTTTTCAAGTTTGACTTCTAAGTTCTGATAGAATCAATTCTGAATGAATTACTTTTTTTTAATCACGCTTACTTTTTGCTCTCACACATCTAGAACACAAGCATCGTACTAGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCTACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCTTTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCATCGGCTTTATCGGCTTGTCTCTGTGCAGTCTGGAGAGCCTCTGCATGTTCATCCTGTAGGAGGGATCGTTCAAAACTCTCTTCACAGCTGCCAGGAAGTTGTCGTCCTTGTCCACAGTCCTAAGGCTCAGAATCTCAGCTCCTCCTCTCTCTTTCAGACGCAGCAGGTTGTCATATTGGTCAAAAAACACAGGTAGACCTACAACTGGGACTCCGTGATACATAGCTTCCTGAACTCCATTCGTTCCTCCGTGAAGCACAAACAGTTTTGTTTTGGGATGCCCTAAAAAATCATTCTGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_347#0 -------------------ACAAGAATACAAGAATCATACGATATATGAAATTTGCTACA 41
consensus_347#1 GTTTTACAATGTTTTTATTTTAATACACCATTAATCACACAACATGTGAAATTTGCTGGT 60
** * ** ***** ** * ** ***********
consensus_347#0 ACATAATGATTTTCAAAGTGTGATTTTTAAGTTCTGATAGAATCAATTCTAAATGAATGT 101
consensus_347#1 AGATAATAATTTTTCAAGTTTGACTTCTAAGTTCTGATAGAATCAATTCTGAATGAATTA 120
* ***** ***** **** *** ** *********************** *******
consensus_347#0 CTTTTTTTTAAATCATGCTTAATTTTTGCTCTCACACATCTAGAACACAAGCATCGTACT 161
consensus_347#1 CTTTTTTTTAA-TCACGCTTACTTTTTGCTCTCACACATCTAGAACACAAGCATCGTACT 179
*********** *** ***** **************************************
consensus_347#0 AGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCT 221
consensus_347#1 AGAGCAGCAAAGGTCATGAAAATGAGCAGCGTGATTCCAGCTAAGAAGAGCATCACGTCT 239
************************************************************
consensus_347#0 ACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCT 281
consensus_347#1 ACAGAGTGATAGGAATACCAGGGCAGCCTGTAGGACTCAGTCCTCAGGTGAGCTGCACCT 299
************************************************************
consensus_347#0 TTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCAGCGGCTTCATCGGCGCG 341
consensus_347#1 TTGTGTCTCATGACAAACTCTATCCAGAAGAGGGCGCTGTCCATCGGCTTTATCGGCTTG 359
******************************************* ****** ****** *
consensus_347#0 TCTCTGTGCAGGCAACCCGAGGTGGGGAGCCAGCAGGACCCCTCCTCCGTCAGCAGGATC 401
consensus_347#1 TCTCTGTGCAGTC---------TGGAGAGCCT-CTGCATGTTCATCCTGTAGGAGGGATC 409
*********** * *** ***** * * * * ** * *****
consensus_347#0 TGTCACAACTAGGTCAAATTTGGAAGCTTGGAAGGATTCCATCAACTCTTTACTCTCAAA 461
consensus_347#1 GTTCAAAACTCTCTTCA---CAGCTGCCAGGAAGTTGTCGTCCTTGTCCACAGTC-CTAA 465
*** **** * * * ** ***** ** * ** * ** * **
consensus_347#0 AGTGTATAATCACTTCACATGTTTTCCTGTGCAATTCATAGAAGCTGT-ATTTCAATCTT 520
consensus_347#1 GGCTCAGAATCTCAGCTCCTCCTCTCTCTTTCAGACGCAGCAGGTTGTCATATTGGTCAA 525
* * **** * * * * * ** * ** * * *** ** * **
consensus_347#0 GACAACTTGTTATGCTGAAATGTGTCGTTTTCCCTGACAGCAACGTTGAGTGTGATGGTC 580
consensus_347#1 AAAACACAGGTAGACCTACAACTG--GGACTCCGTGATA-CATAGCTTCCTGAACTCCAT 582
* * * ** * * * ** * *** *** * ** * * ** *
consensus_347#0 TAGTAATGTAGAGATGTTTGGCTGATGTACCAGCTGTCCGCAGCCTGGATCACCATCACC 640
consensus_347#1 TCGTTCCTCCGTGAAGC---ACAAACAGTTTTGTTTTGGGATGCCCTAA--AAAATCATT 637
* ** * ** * * * * * * * *** * * ****
consensus_347#0 TTGTGCAGCTCCTCAACCAGGACCCT 666
consensus_347#1 CTGAGG-------------------- 643
** *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |