These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCACTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTTGTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCCGAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGGCACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC] [+] EMBL CA331148 [TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCACTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTTGTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCCGAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGGCACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC] consensusID : consensus_366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTAACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAGTTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCCAAGAACCGACACGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA] [+] EMBL CA331213 [TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTAACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAGTTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCCAAGAACCGACACGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAACATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACGTGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCTTCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAAAACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_366#0 TTGTTTACCAAAAGTTTTACAAAAACACTATTCTACAAGGGACCTTGTGTCACATTCTCA 60 consensus_366#1 TTGTTTATTTAAATTTTCACAATAACAATACTCTCAAGGACACTAAGCATCACTCCTGTA 60 ******* *** *** **** **** ** *** * * ** * **** * consensus_366#0 CTGATTGGCGTACTAATACCAAATCCTTGCCAAATTAATAAATGGATCCTCTCTGCGCTT 120 consensus_366#1 ACCATTGGTGGAAGACTACCCTTTCCTGTCCTCTGCACATCTTCAATCCCTTTTTCTCAG 120 ***** * * * **** **** ** * * **** * * * * consensus_366#0 GTCACTCTTGGGTGCATCACCAGGAATGTGGCCTGCACCCCCACCACATATATTGCTCCC 180 consensus_366#1 TTCTGCCACTGGCTCTCCTCCCGCGCACCAAAGAGGTCTCCAACGCCATCGTTTGCTCCC 180 ** * ** * * ** * * * ** ** *** ******** consensus_366#0 GAGAGCTTGCAGCACCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAA 240 consensus_366#1 AAGAACCGACA-CGCCGCTGCTTTTCGTAAGACTTCACGGGTGGATTTAAGAACGCACAA 239 *** * ** * ********************************************** consensus_366#0 CATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACG 300 consensus_366#1 CATTAGCTTTGCTAAATGTAACAAAAGACACAATTCGCACAGACACAGACAAGTGAGACG 299 ************************************************************ consensus_366#0 TGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCT 360 consensus_366#1 TGAAACACGGAATGTACACGCTGGGTCGGGGTGTCTTTGGGCTACCGTCAGCCGGCACCT 359 ************************************************************ consensus_366#0 TCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAA 420 consensus_366#1 TCCCGCTGTATATTATCCCGACAGATTCTAAAGATCTCTGTTGCAGGAGTATGAAAATAA 419 ************************************************************ consensus_366#0 AACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGACGG 480 consensus_366#1 AACCGCTACTTCTTTACAGTTTGATTTGAGTGGAGTGCTGAAGCTGGTGCGACCCGA--- 476 ********************************************************* consensus_366#0 CACCCTGTAGTGGTGAGACTACTCATCCGGCCCCTCGGGGGGTTCATATCC 531 consensus_366#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |