These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [CTGGAGAATTTAATTTTCCATTAACAAATATAAAAATAAACACATTTAATGCTTTTAGTTACAAAATCAGTAATAAATTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCTGAAATCTCTTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAAGTCGATCTCTATCTCGTCTGGGTTGGTCTCGCACATGGAGGGCTCCAGCGTTTGAATGATCTGCACCACGCGGCCCAGTTTCTTGCCAGGTAGACGGTTAATATCCAAGCTCAGCTGGTGCTTCTCCTCGTACGTCAATGGAAGACATTTGTTATCGGGATCCCAGGTTTTTAACTTGCAAGGACTCCCAGGGTCAGAGGTCGGACTGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATCATCCTTTCTCTTTCTTTATTCACGGGGACTTCAAAAAATGGAGCAAGGGATCAGGGACAGCTTTAACTGTTCTGCCCCACCTGTTCCTGCAAATCACAAGTG] [+] EMBL CA331155 [CTGGAGAATTTAATTTTCCATTAACAAATATAAAAATAAACACATTTAATGCTTTTAGTTACAAAATCAGTAATAAATTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCTGAAATCTCTTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAAGTCGATCTCTATCTCGTCTGGGTTGGTCTCGCACATGGAGGGCTCCAGCGTTTGAATGATCTGCACCACGCGGCCCAGTTTCTTGCCAGGTAGACGGTTAATATCCAAGCTCAGCTGGTGCTTCTCCTCGTACGTCAATGGAAGACATTTGTTATCGGGATCCCAGGTTTTTAACTTGCAAGGACTCCCAGGGTCAGAGGTCGGACTGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATCATCCTTTCTCTTTCTTTATTCACGGGGACTTCAAAAAATGGAGCAAGGGATCAGGGACAGCTTTAACTGTTCTGCCCCACCTGTTCCTGCAAATCACAAGTG] consensusID : consensus_367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTTTTTAAAAATAAACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG] [-] EMBL FR0056711 [GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTTTTTAAAAATAAACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_367#0 -------------------------CTGGAGAATTTAATTTTCCATTAACAAATATAAAA 35 consensus_367#1 GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTT---TTTAAAA 57 * * * ** * ***** consensus_367#0 ATAAACACATTTAATGCTTTTAGTTACAAAATCAGTAATAAATTAAAACGACACAGTCAA 95 consensus_367#1 ATAAACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAA 117 ****************** **** **************** ***************** consensus_367#0 GAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTG 155 consensus_367#1 GAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTG 177 ************************************************************ consensus_367#0 CAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTC-TGAAATCTCTTAAACTTCTGATG 214 consensus_367#1 CAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATG 237 ************************************ ********* ************* consensus_367#0 CAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAA 274 consensus_367#1 CAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG--------- 288 *********************************************** *** consensus_367#0 GTCGATCTCTATCTCGTCTGGGTTGGTCTCGCACATGGAGGGCTCCAGCGTTTGAATGAT 334 consensus_367#1 ------------------------------------------------------------ consensus_367#0 CTGCACCACGCGGCCCAGTTTCTTGCCAGGTAGACGGTTAATATCCAAGCTCAGCTGGTG 394 consensus_367#1 ------------------------------------------------------------ consensus_367#0 CTTCTCCTCGTACGTCAATGGAAGACATTTGTTATCGGGATCCCAGGTTTTTAACTTGCA 454 consensus_367#1 ------------------------------------------------------------ consensus_367#0 AGGACTCCCAGGGTCAGAGGTCGGACTGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATC 514 consensus_367#1 ------------------------------------------------------------ consensus_367#0 ATCCTTTCTCTTTCTTTATTCACGGGGACTTCAAAAAATGGAGCAAGGGATCAGGGACAG 574 consensus_367#1 ------------------------------------------------------------ consensus_367#0 CTTTAACTGTTCTGCCCCACCTGTTCCTGCAAATCACAAGTG 616 consensus_367#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |