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Takifugu rubripes
cluster # 367 cluster # 367       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_367#0 length = 616 sequences # 1  
consensus_367#1 length = 288 sequences # 1  

consensusID : consensus_367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [CTGGAGAATTTAATTTTCCATTAACAAATATAAAAATAAACACATTTAATGCTTTTAGTTACAAAATCAGTAATAAATTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCTGAAATCTCTTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAAGTCGATCTCTATCTCGTCTGGGTTGGTCTCGCACATGGAGGGCTCCAGCGTTTGAATGATCTGCACCACGCGGCCCAGTTTCTTGCCAGGTAGACGGTTAATATCCAAGCTCAGCTGGTGCTTCTCCTCGTACGTCAATGGAAGACATTTGTTATCGGGATCCCAGGTTTTTAACTTGCAAGGACTCCCAGGGTCAGAGGTCGGACTGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATCATCCTTTCTCTTTCTTTATTCACGGGGACTTCAAAAAATGGAGCAAGGGATCAGGGACAGCTTTAACTGTTCTGCCCCACCTGTTCCTGCAAATCACAAGTG]

[+] EMBL CA331155             [CTGGAGAATTTAATTTTCCATTAACAAATATAAAAATAAACACATTTAATGCTTTTAGTTACAAAATCAGTAATAAATTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCTGAAATCTCTTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAAGTCGATCTCTATCTCGTCTGGGTTGGTCTCGCACATGGAGGGCTCCAGCGTTTGAATGATCTGCACCACGCGGCCCAGTTTCTTGCCAGGTAGACGGTTAATATCCAAGCTCAGCTGGTGCTTCTCCTCGTACGTCAATGGAAGACATTTGTTATCGGGATCCCAGGTTTTTAACTTGCAAGGACTCCCAGGGTCAGAGGTCGGACTGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATCATCCTTTCTCTTTCTTTATTCACGGGGACTTCAAAAAATGGAGCAAGGGATCAGGGACAGCTTTAACTGTTCTGCCCCACCTGTTCCTGCAAATCACAAGTG]


>consensus_367#0 CTGGAGAATTTAATTTTCCATTAACAAATATAAAAATAAACACATTTAATGCTTTTAGTT ACAAAATCAGTAATAAATTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCG TGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGAT TGCTTCTCTTCTGAAATCTCTTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAA GCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAAGTCGATCTCTATCTCGTCTGGGTTGG TCTCGCACATGGAGGGCTCCAGCGTTTGAATGATCTGCACCACGCGGCCCAGTTTCTTGC CAGGTAGACGGTTAATATCCAAGCTCAGCTGGTGCTTCTCCTCGTACGTCAATGGAAGAC ATTTGTTATCGGGATCCCAGGTTTTTAACTTGCAAGGACTCCCAGGGTCAGAGGTCGGAC TGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATCATCCTTTCTCTTTCTTTATTCACGGG GACTTCAAAAAATGGAGCAAGGGATCAGGGACAGCTTTAACTGTTCTGCCCCACCTGTTC CTGCAAATCACAAGTG



consensusID : consensus_367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence
                              [GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTTTTTAAAAATAAACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG]

[-] EMBL FR0056711            [GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTTTTTAAAAATAAACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAAGAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATGCAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG]


>consensus_367#1 GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTTTTTAAAAATA AACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAAGAG TCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTGCAG CCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATGCAG ACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_367#0      -------------------------CTGGAGAATTTAATTTTCCATTAACAAATATAAAA 35
consensus_367#1      GGCCCAAAAATCGGGACCCGGCCCCCCCCCGGGGCCATCCCCCCGCGTTT---TTTAAAA 57
                                              *    *     *     **         * *****

consensus_367#0      ATAAACACATTTAATGCTTTTAGTTACAAAATCAGTAATAAATTAAAACGACACAGTCAA 95
consensus_367#1      ATAAACACATTTAATGCTCCTAGTCACAAAATCAGTAATAACCTAAAACGACACAGTCAA 117
                     ******************  **** ****************  *****************

consensus_367#0      GAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTG 155
consensus_367#1      GAGTCGGATTCTGAACTGGAGTCCGTGGAGCTGCACGAGGAGGATGTGGAAGAGCTGCTG 177
                     ************************************************************

consensus_367#0      CAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTC-TGAAATCTCTTAAACTTCTGATG 214
consensus_367#1      CAGCCTGACTGAGATGCAGCCTGATTGCTTCTCTTCCTGAAATCTCCTAAACTTCTGATG 237
                     ************************************ ********* *************

consensus_367#0      CAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTTCAGCACCTCAAA 274
consensus_367#1      CAGACATTTCTTCACGTACTGCTGAAGCCGGCGCAGCGTGGACGGCTCCAG--------- 288
                     *********************************************** ***         

consensus_367#0      GTCGATCTCTATCTCGTCTGGGTTGGTCTCGCACATGGAGGGCTCCAGCGTTTGAATGAT 334
consensus_367#1      ------------------------------------------------------------
                                                                                 

consensus_367#0      CTGCACCACGCGGCCCAGTTTCTTGCCAGGTAGACGGTTAATATCCAAGCTCAGCTGGTG 394
consensus_367#1      ------------------------------------------------------------
                                                                                 

consensus_367#0      CTTCTCCTCGTACGTCAATGGAAGACATTTGTTATCGGGATCCCAGGTTTTTAACTTGCA 454
consensus_367#1      ------------------------------------------------------------
                                                                                 

consensus_367#0      AGGACTCCCAGGGTCAGAGGTCGGACTGCCTCTGGGTTGCCTGTCGGTTTTGCTTTCATC 514
consensus_367#1      ------------------------------------------------------------
                                                                                 

consensus_367#0      ATCCTTTCTCTTTCTTTATTCACGGGGACTTCAAAAAATGGAGCAAGGGATCAGGGACAG 574
consensus_367#1      ------------------------------------------------------------
                                                                                 

consensus_367#0      CTTTAACTGTTCTGCCCCACCTGTTCCTGCAAATCACAAGTG 616
consensus_367#1      ------------------------------------------
                                                               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)