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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[TAGAGGGCTTTCTTTGTCTCTTTATGCATCATATAAAACACACAGACAGGAGATGATCGCTGCCTCGCTGTAGAAAAAGAATGGGCCTCAAATGAAAGACAAAGCTGAAATGTAACCCTGCGGCCACCTCAAATCACAGATAACTCACACAAGTCCATGATTGTCGCTTCGATGAAGCATCTGGTTCTACACATCTGAGGAGTTTTTCGGAAAGGAGACGCGGTCTTGATTTTGACACCAAAGTCGTCATCACTGGCAGCAGCTGCACTTTTTCTCCTTCTTTGATGGGATGTACAGCAAGTGGCTGCTTATTGGGACCTCGCCCATCTGCGTGGCCGACCCTTTTTCCTCCAACTCGGCCAGGATGCTGTTCTCGAACCCCAGTGAGGCAACCCGAGAGAAAAACTCGTTGACGTTCTCCCCTGTCAGCGACGACACGGCCCAGTACTCCGCGCCGATCTCCCGCGCTAGCTTCAGAGCGTCTCGTTCCATCTGAGAGTACTGAGCGGGAGAGCTCAGGTCTTTCTTCGTGCCCACGAGGAACAGCTGGATAGCTGCTACGTCGTTGTCCTCCAATGACTCTCCCAGCCACTGCCTCACATGGGAAAAGGAGCCGATATCGTTCACGTCAAAGGC]
[+] EMBL CA331186 [TAGAGGGCTTTCTTTGTCTCTTTATGCATCATATAAAACACACAGACAGGAGATGATCGCTGCCTCGCTGTAGAAAAAGAATGGGCCTCAAATGAAAGACAAAGCTGAAATGTAACCCTGCGGCCACCTCAAATCACAGATAACTCACACAAGTCCATGATTGTCGCTTCGATGAAGCATCTGGTTCTACACATCTGAGGAGTTTTTCGGAAAGGAGACGCGGTCTTGATTTTGACACCAAAGTCGTCATCACTGGCAGCAGCTGCACTTTTTCTCCTTCTTTGATGGGATGTACAGCAAGTGGCTGCTTATTGGGACCTCGCCCATCTGCGTGGCCGACCCTTTTTCCTCCAACTCGGCCAGGATGCTGTTCTCGAACCCCAGTGAGGCAACCCGAGAGAAAAACTCGTTGACGTTCTCCCCTGTCAGCGACGACACGGCCCAGTACTCCGCGCCGATCTCCCGCGCTAGCTTCAGAGCGTCTCGTTCCATCTGAGAGTACTGAGCGGGAGAGCTCAGGTCTTTCTTCGTGCCCACGAGGAACAGCTGGATAGCTGCTACGTCGTTGTCCTCCAATGACTCTCCCAGCCACTGCCTCACATGGGAAAAGGAGCCGATATCGTTCACGTCAAAGGC]
consensusID : consensus_373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[CACGAGGAACAGCTGGATAGCTGCTACGTCGTTGTCCTCCAATGACTCTCCCAGCCACTGCCTCACATGGGAAAAGGAGCCGATATCGTTCACGTCAAAGGCGACGATCACGACCTGAGCTCCTCTGTAGTACGAGGAAGCGATACATTTGTACCTCTCTTGTCCTGAGGTGTCCCATAGCTGGAGCGTGAAGGGAACACCCAGCACCTGGAAATTCTCTATCTCAAAGTCCACCCCCAACGTTGCATTATAGTTTCTATCAAAGACGTCTTTGCAAAACCTATTAATCAGACAGGTCTTGCCCACAGCCAGGTCGCCCACCACGATCACTTTAGAGATCTTATAAGCCAGGCGTCCGCTAGGCTGCTCCTGACAGACCGTCTTGACCTTGTCGTTAAAGTTCTCCCTTCTGTGCAACGCAGCCTCTCTCCTAAAACACTGGGGGAGCCGAGAGATGATGCGGTCGTTCTGGATGGGAGGAAGGAGGTTCATGGCTGAAACCCAGACAGCTTCAGCTTGAAAGGACAGATGGTTCCGCTCAGGTTCTGCTCTTCTCCGGGCGCTGGGCTTGGTTTTCTATTTTTAGAATTGCTGACCAGTTGAAGTTAGTTGGCGCCAGTTGT]
[-] EMBL CA332887 [CACGAGGAACAGCTGGATAGCTGCTACGTCGTTGTCCTCCAATGACTCTCCCAGCCACTGCCTCACATGGGAAAAGGAGCCGATATCGTTCACGTCAAAGGCGACGATCACGACCTGAGCTCCTCTGTAGTACGAGGAAGCGATACATTTGTACCTCTCTTGTCCTGAGGTGTCCCATAGCTGGAGCGTGAAGGGAACACCCAGCACCTGGAAATTCTCTATCTCAAAGTCCACCCCCAACGTTGCATTATAGTTTCTATCAAAGACGTCTTTGCAAAACCTATTAATCAGACAGGTCTTGCCCACAGCCAGGTCGCCCACCACGATCACTTTAGAGATCTTATAAGCCAGGCGTCCGCTAGGCTGCTCCTGACAGACCGTCTTGACCTTGTCGTTAAAGTTCTCCCTTCTGTGCAACGCAGCCTCTCTCCTAAAACACTGGGGGAGCCGAGAGATGATGCGGTCGTTCTGGATGGGAGGAAGGAGGTTCATGGCTGAAACCCAGACAGCTTCAGCTTGAAAGGACAGATGGTTCCGCTCAGGTTCTGCTCTTCTCCGGGCGCTGGGCTTGGTTTTCTATTTTTAGAATTGCTGACCAGTTGAAGTTAGTTGGCGCCAGTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_373#0 TAGAGGGCTTTCTTTGTCTCTTTATGCATCATATAAAACACACAGACAGGAGATGATCGC 60
consensus_373#1 CACGAGGAACAGCTGGATAGCTGCTACGTCGT-TGTCCTCCAATGACTCTCC-CAGCCAC 58
* ** * * * * * ** * * ** *** * *
consensus_373#0 TGCCTCGCTGTAGAAAAAGAATGGGCCTCAAATGAAAGACAAAGCTGAAATGTAACCCTG 120
consensus_373#1 TGCCTCACATGGGAAAAGGAGCCGATATC--GTTCACGTCAAAGGCGACGATCACGACCT 116
****** * ***** ** * ** * * * ***** ** * *
consensus_373#0 CGGCCACCTCAAATCACAGATAACTCACACAAGTCCATGATTGTCGCTTCGATGAAGCAT 180
consensus_373#1 GAGCTCCTCTGTAGTACGAGGAAGCGATACATTTGTACCTCTCTTGTCCTGA-------- 168
** * * ** ** * *** * * * * * **
consensus_373#0 CTGGTTCTACACATCTGAGGAGTTTTTCGGAAAGGAGACGCGGTCTTGATTTTGACACCA 240
consensus_373#1 --GGTGTCCCATAGCTGGAGCGTGAAGGGAACACCCAGCACCTGGAAATTCTCTATCTCA 226
*** ** * *** * ** * * * * * * * * **
consensus_373#0 AAGTCGTCATCACTGGCAGCAGCTGCACTTTTTCTCCTTCTTTGATGGGATGTACAGCAA 300
consensus_373#1 AAGTC-----CACCCCCAAC-GTTGCATTATAGTTTCTATCAAAGACGTCTTTGCAA-AA 279
***** *** ** * * **** * * * ** * * * ** **
consensus_373#0 GTGGCTGCTTATTGGGACCTCGCCCAT--CTGCGTGGCCGACCCTTTTTCCTCCA---AC 355
consensus_373#1 CCTATTAATCAGACAGGTCTTGCCCACAGCCAGGTCGCCCACCACGATCACTTTAGAGAT 339
* * * * ** ***** * ** *** *** * ** * *
consensus_373#0 TCGGCCAGGATGCTGTTCTCGAACCCCAGTGAGGCAACCCGAGAGAAAAAC-TCGTTGAC 414
consensus_373#1 CTTATAAGCCAGGCGTCCGCTAGGCTGCTCCTGACAGACCGTCTTGACCTTGTCGTTAAA 399
** * ** * * * * * ** *** * ***** *
consensus_373#0 GTTCTCCCCTGTCAGCGACGACACGGCCCAGTACTCCGCGCCGATCTCCCGCGCTAGCTT 474
consensus_373#1 GTTCTCCCTTCTGTGCAACG---CAGCCT--CTCTCCTAAAACACTGGGGGAGCCGAGAG 454
******** * * ** *** * *** **** * * **
consensus_373#0 CAGAGCGTCTCGTTCCATCTGAGAGTACTGAGCGGGAGAGCTCAGGTCTTTCTTCGTGC- 533
consensus_373#1 ATGATGCGGTCGTTCTGGATGGGAGGAAGGAGGTTCATGGCTGAAACCCAGACAGCTTCA 514
** ****** ** *** * *** * *** * * * *
consensus_373#0 -CCACGAGGAACAGCTGGATA-GCTGCTACGTCGTTGTCCTCCAATGACTCTCCCAGCCA 591
consensus_373#1 GCTTGAAAGGACAGATGGTTCCGCTCAGGTTCTGCTCTTCTCCGGGCGCTGGGCTTGGTT 574
* * * **** *** * *** * * * **** ** * *
consensus_373#0 CTGC---CTCACATGGGAAAAGGAGCCGATATC-GTTCACGTCAAAGGC 636
consensus_373#1 TTCTATTTTTAGAATTGCTGACCAGTTGAAGTTAGTTGGCGCCAGTTGT 623
* * * * * * ** ** * *** ** ** *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |