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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 404 cluster # 404       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_404#0 length = 460 sequences # 1  
consensus_404#1 length = 326 sequences # 1  

consensusID : consensus_404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence
                              [CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTATTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCCACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAAGTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAAAGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAGATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTATCCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC]

[+] EMBL CA588842             [CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTATTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCCACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAAGTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAAAGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAGATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTATCCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC]


>consensus_404#0 CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTA TTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCC ACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAA GTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAA AGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAG ATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA TTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTAT CCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC



consensusID : consensus_404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence
                              [CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACATTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATTATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG]

[+] EMBL CA331517             [CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACATTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATTATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG]


>consensus_404#1 CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACA TTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATT ATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTC CTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTC CCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGA AGGATGTTTTGGACAGGAGTGGGATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_404#0      CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTA 60
consensus_404#1      ---------------------------------------------------CAAATTACA 9
                                                                        *   *   *

consensus_404#0      TTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCC 120
consensus_404#1      GCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACT-GTAGTACATTTGTACT 68
                       ** *** **   **  ***    *    ***  **  ** * ** ****   **  * 

consensus_404#0      ACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAA 180
consensus_404#1      TTG-------ACATAC---AGCTGTA-AGCATATTGGAATATC----ATTTA------AA 107
                       *       *****    *** *** *  *    * * * *      * **      **

consensus_404#0      GTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAA 240
consensus_404#1      GGAGCAGCGGATTATCCAG----CACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCAT 163
                     * ******  **  *** *     ****      * *       *    * *      * 

consensus_404#0      AGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAG 300
consensus_404#1      GCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGT-TCAGCACCAT------- 215
                           *  ** *  *  * *  **   *   * * ****      * *****       

consensus_404#0      ATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA 360
consensus_404#1      -TTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA 274
                      *    * ****  ** *******************************************

consensus_404#0      TTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTAT 420
consensus_404#1      TTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG-------- 326
                     ************************ ***************************        

consensus_404#0      CCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC 460
consensus_404#1      ----------------------------------------
                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)