These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTATTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCCACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAAGTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAAAGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAGATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTATCCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC] [+] EMBL CA588842 [CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTATTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCCACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAAGTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAAAGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAGATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTATCCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC] consensusID : consensus_404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACATTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATTATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG] [+] EMBL CA331517 [CAAATTACAGCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACTGTAGTACATTTGTACTTTGACATACAGCTGTAAGCATATTGGAATATCATTTAAAGGAGCAGCGGATTATCCAGCACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCATGCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGTTCAGCACCATTTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGATTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_404#0 CAATCTGACAGAGTGATCGCTTTTAACTTAAAAGTTGCATCATATGCTTTTCTTCTAGTA 60 consensus_404#1 ---------------------------------------------------CAAATTACA 9 * * * consensus_404#0 TTTCCACGTTGATGAGGGTTAGTAAAAATGACTGATTCACAATAGTTGTACTAGTGCGCC 120 consensus_404#1 GCTCAACGGTGTGCAGCTTTATGTTATGACACTATTTTTCACT-GTAGTACATTTGTACT 68 ** *** ** ** *** * *** ** ** * ** **** ** * consensus_404#0 ACGGAAAAAAACATAAATAAGCCGTAGAATAAGCCGCAGTGTTTAAAGTGTAGGAAAAAA 180 consensus_404#1 TTG-------ACATAC---AGCTGTA-AGCATATTGGAATATC----ATTTA------AA 107 * ***** *** *** * * * * * * * ** ** consensus_404#0 GTAGCAGCTTATAGTCCGGAAATTACGGTAGTCACAGGAAATACATGGATACAAAAATAA 240 consensus_404#1 GGAGCAGCGGATTATCCAG----CACGGCTACTCCTGCTGNCNAACCCCTCCGTCTGCAT 163 * ****** ** *** * **** * * * * * * consensus_404#0 AGAAAAAGATCATTTTAATAATAAATCTCTTTGTGTACTTACACTTGAACCATACAGGAG 300 consensus_404#1 GCTCGGAACTCTTGGTCCTCAACAAATGCCCCGCGCACTTGT-TCAGCACCAT------- 215 * ** * * * * ** * * * **** * ***** consensus_404#0 ATAAGGTTCCTTACCTGACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA 360 consensus_404#1 -TTCTCTCCCTTTTCTAACATATGTCCCAAAGACTCCCAGCTCACAAAGACAGGTGCTGA 274 * * **** ** ******************************************* consensus_404#0 TTTTGAGAGGAGCGTCTCGCTTCAAAAGGATGTTTTGGACAGGAGTGGGATGAATTTTAT 420 consensus_404#1 TTTTGAGAGGAGCGTCTCGCTTCAGAAGGATGTTTTGGACAGGAGTGGGATG-------- 326 ************************ *************************** consensus_404#0 CCATCAAAATGTAGGCCATCCTCTCCTCGCTCCCCTTGAC 460 consensus_404#1 ---------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |