These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACATTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGATGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGGCTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAATCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCACAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGAGCAACAAAGTCCAGTTTCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGTGGGAACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACCTGAACCAGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC] [+] EMBL CA331573 [GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACATTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGATGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGGCTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAATCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCACAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGAGCAACAAAGTCCAGTTTCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGTGGGAACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACCTGAACCAGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC] consensusID : consensus_413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GGAAGTCCAGTTTCACCTACAGAGGGGTGGGGAAGGGGTGGGGGGCAACAGATGTGAAACAAGAGCCAGGCTAAAGAGCACTAATCACAGCGGACCCCCGTCACCCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGCAGGGCGGACAACAGTCAAACGTCAGTGTCGGGCCTCGGTACCTGCCAGGAACCGAGCTCCTCCATCC] [+] EMBL FR0060891 [GGAAGTCCAGTTTCACCTACAGAGGGGTGGGGAAGGGGTGGGGGGCAACAGATGTGAAACAAGAGCCAGGCTAAAGAGCACTAATCACAGCGGACCCCCGTCACCCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAGATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGCAGGGCGGACAACAGTCAAACGTCAGTGTCGGGCCTCGGTACCTGCCAGGAACCGAGCTCCTCCATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_413#0 GTCTTTATTGCAAAAAATAGTTCAGACACCGGTGCAGCATCCTAAAAACAGCGCTACACA 60 consensus_413#1 ------------------------------------------------------------ consensus_413#0 TTTAATGTGTAAATCCAACAAAAACAAAACAGAGACGTCTGATCCTGATACGCGAGTCGA 120 consensus_413#1 ------------------------------------------------------------ consensus_413#0 TGAGCGACTTCTCATTTGAGTCGGGGGATAAAAGATGCGCAACACAAAGGACATCAAAGG 180 consensus_413#1 ------------------------------------------------------------ consensus_413#0 CTGAATATCTACAGGCGAGGAGGCGTGGTTTGCACATCAAAGCCAGGAGCTCAGTCTGAA 240 consensus_413#1 ------------------------------------------------------------ consensus_413#0 TCGCTGTCTCCGTCACTGTCCGCCTCCTTCACGTCGACGCCGAACTTGTACTCCTGGTCA 300 consensus_413#1 ----------------------------------GGAAGTCCAGTTTCACCTACAGAGGG 26 ** * * * ** ** * * consensus_413#0 CAGCCCATGTAGGCGTCGCTCATGAAGTACAGCGTGTAGTTGTGGATGCCCATGGCCGGA 360 consensus_413#1 GTGGGGAAG-GGGTGGGGGGCAACAGATGTGAAACAAGAGCCAGGCTAAAGAGCACTAAT 85 * * * ** * * ** * * ** * * * consensus_413#0 -GCAACAAAGTCCAGTT--TCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAG 417 consensus_413#1 CACAGCGGACCCCCGTCACCCACCTTTGCTTTCTGCTGCAGCGTCAGCCTCTTGATGGAG 145 ** * * ** ** **************************************** consensus_413#0 ATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGT 477 consensus_413#1 ATCAGGCTGTTGGACTTGGGGTCTCCGATCACCACCCACCAACCCTCCTCACGTTTCTGC 205 *********************************************************** consensus_413#0 GGGA---ACAGCGGTGCTATGACGGGCCCGGTCACCTCCTCCTCCCTCTCCAACTGAACC 534 consensus_413#1 AGGGCGGACAACAGTCAAACGTCAGTGTCGG--GCCTCGGTACCTGCCAGGAACCGAGCT 263 ** *** * ** * * * * *** **** * * *** ** * consensus_413#0 TGAACCAGGACCGGACTCCCGCTCTTGATGTTGTCCTTCTCCGC 578 consensus_413#1 C---CTCCATCC-------------------------------- 272 * ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |