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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC]
[+] EMBL CA331694 [ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC]
consensusID : consensus_430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAGTCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTCGTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATAGCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGCAGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACCA]
[+] EMBL CA332048 [TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAGTCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTCGTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATAGCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGCAGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_430#0 ---------------ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTA 45
consensus_430#1 TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTA 60
********************** **********************
consensus_430#0 TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA 105
consensus_430#1 TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA 120
************************************************************
consensus_430#0 GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC 165
consensus_430#1 GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC 180
************************************************************
consensus_430#0 CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAT 225
consensus_430#1 CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAG 240
***********************************************************
consensus_430#0 TTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGT 285
consensus_430#1 TCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAA-ACGTAGTAGGGGT 299
* ********************* ************* ** * ** ** * ***
consensus_430#0 CGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCT 345
consensus_430#1 CGTCGTAACCG-CCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCA 358
*********** * * * * ** ** ** **** * * *** * *
consensus_430#0 TGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACC 405
consensus_430#1 TAGCCGTAATAATCG----GGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCC 414
* * * * ** * * **** * * * ** * *** * **
consensus_430#0 TTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGT-TCCCCCGCCCCCCCG 464
consensus_430#1 T---CTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGG 471
* *** * * * * ** * ** *** * * * * *
consensus_430#0 CGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATA 524
consensus_430#1 TGTTTTAGCAGCT---TGCCTCTGAGC----TTTGCGCTCTTTCCTCT--TCTGATCAGG 522
** * * * ** ** * ** ** ******** ** ** ****
consensus_430#0 GCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCC 584
consensus_430#1 AGGCTT-----GGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGA 577
** ****** * ***** * * * **
consensus_430#0 TCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC 641
consensus_430#1 TCAGCCAGAGCCT---TCACTGCACCA------------------------------ 601
** *** ** ***** * ***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |