These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TAGATTTAATTCAGTTTAATACAAGGCAATAAAACATACAAACAACTTACACAACACGACCCAGAACAATAATAAAATGTATTATTAGTGACTAAGGAATTAAAATGTCATCCCAGCCCCACCCCTGATGTAACTGTCAAGCTGAGAGCTATAAAGTGCGTCCCTGCTGTATGTAATCACCAAAAAGGCAGCTATTTCAGTATTTTTTTCTAAAGAAAGTTGAATATTTTAGGCACTAAAGGAGCCTTGTGATCACTTAAAAAACAAAAGCTCTGTTCCAAATACACAATATTTATCAGCCTTTTAATTTGTCAAAAGCTATTATTCACAGCAACTCAAAATCCACTTTACTTTCAACATTCAGGTGATCGAAACCGTATCTTCCCTTGCATTGCAAATATAGTATTAAAAAGCATCCAGCAGTTTTGTCTGTGATCAACACATCAGCATTTTTGTCCTATGGAGCAGTCAGTTCTTCCCTCTGGCAGCAAAGGTCCCCTTGATGATTCCAAGACCTCATAGGTGGTTCCTGTCCAGAACTGCCTCATCTCTTTCCTGTAGCCAGCCACTGCAGCGGCGGTGATCAGGGTGAAGGGAACCAGGTA] [+] EMBL CA331805 [TAGATTTAATTCAGTTTAATACAAGGCAATAAAACATACAAACAACTTACACAACACGACCCAGAACAATAATAAAATGTATTATTAGTGACTAAGGAATTAAAATGTCATCCCAGCCCCACCCCTGATGTAACTGTCAAGCTGAGAGCTATAAAGTGCGTCCCTGCTGTATGTAATCACCAAAAAGGCAGCTATTTCAGTATTTTTTTCTAAAGAAAGTTGAATATTTTAGGCACTAAAGGAGCCTTGTGATCACTTAAAAAACAAAAGCTCTGTTCCAAATACACAATATTTATCAGCCTTTTAATTTGTCAAAAGCTATTATTCACAGCAACTCAAAATCCACTTTACTTTCAACATTCAGGTGATCGAAACCGTATCTTCCCTTGCATTGCAAATATAGTATTAAAAAGCATCCAGCAGTTTTGTCTGTGATCAACACATCAGCATTTTTGTCCTATGGAGCAGTCAGTTCTTCCCTCTGGCAGCAAAGGTCCCCTTGATGATTCCAAGACCTCATAGGTGGTTCCTGTCCAGAACTGCCTCATCTCTTTCCTGTAGCCAGCCACTGCAGCGGCGGTGATCAGGGTGAAGGGAACCAGGTA] consensusID : consensus_437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CATTACAAAGGATTAAATCACACAAGTGAGAAAGAGAAGTGTTCCTCATTTGCTGCCACCATAATTGACAAAAATATCTCTGTCATGTGATTTCTGTTTCCTCTTTTGTTTCTTCTCTGTTCATCTGTGTATTTATCTCATCAGTAGGTCAGCGTGCGCTATATGAGCCATGTAAATTTGTGTATCTACTGCTCAGCTCAGCCTGACACCATGTTTCCAAAGCAGATGTGCAGAAATGTCTGCTACACCAGCGTGAACAGTCAGAGTCACGACAAGCTTTGTCTCCCCAGCTGCCGGTGGTGATGCGTGTGCCGCGCTTCTCGGCCTGGGCTCTGAACATGTGCGGGATGCAGTTCTCCATTCTTGGTTTTGGAGATATCATCGTTCCAGGTCTCTTGGTAGCCTACTGCAGCAGATTTGACGTCCGGATCAACAGCAGAAACAAGGTCTACTTCATCAGCTCCTGCATAGCTTATCTGCTGGGAATAATCATGACATTTGCTGTGATGCTGCTGTCTGGAATGGGCCAGCCTGCCTTGCTCTACCTGGTTCCCTTCACCCTGATC] [+] EMBL CA846775 [CATTACAAAGGATTAAATCACACAAGTGAGAAAGAGAAGTGTTCCTCATTTGCTGCCACCATAATTGACAAAAATATCTCTGTCATGTGATTTCTGTTTCCTCTTTTGTTTCTTCTCTGTTCATCTGTGTATTTATCTCATCAGTAGGTCAGCGTGCGCTATATGAGCCATGTAAATTTGTGTATCTACTGCTCAGCTCAGCCTGACACCATGTTTCCAAAGCAGATGTGCAGAAATGTCTGCTACACCAGCGTGAACAGTCAGAGTCACGACAAGCTTTGTCTCCCCAGCTGCCGGTGGTGATGCGTGTGCCGCGCTTCTCGGCCTGGGCTCTGAACATGTGCGGGATGCAGTTCTCCATTCTTGGTTTTGGAGATATCATCGTTCCAGGTCTCTTGGTAGCCTACTGCAGCAGATTTGACGTCCGGATCAACAGCAGAAACAAGGTCTACTTCATCAGCTCCTGCATAGCTTATCTGCTGGGAATAATCATGACATTTGCTGTGATGCTGCTGTCTGGAATGGGCCAGCCTGCCTTGCTCTACCTGGTTCCCTTCACCCTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_437#0 TAGATTTAATTCAGTTTAATACAAGGCAATAAAACATACAAACAACTTACACAACACGAC 60 consensus_437#1 ----------------CATTACAAAGGATTAAATCACACAAGTGAGAAAGAGAA-GTGTT 43 * ***** * * **** ** **** * * * ** * consensus_437#0 CCAGAACAATAATAAAATGTATTATTAGTGACTAAGGAATTAAAATGTCATCCCAGCCCC 120 consensus_437#1 CCTCATTTGCTGCCAC---CATAATTGACAAAAATATCTCTGTCATGTGATTTCTGTTTC 100 ** * * ** *** * * * **** ** * * * consensus_437#0 ACCCCTGATGTAA---CTGTCAAGCTGAG-AGCTATAAAGTGCGTCCCTGCTGTATGTAA 176 consensus_437#1 CTCTTTTGTTTCTTCTCTGTTCATCTGTGTATTTATCTCATCAGTAGGT-CAGCGTGCGC 159 * * * * **** * *** * * *** * ** * * * ** consensus_437#0 T-CACCAAAAAGGCAGCTATTTCAGTATTTTTTTCTAAAGAAAGTTGAATATTTTAGGCA 235 consensus_437#1 TATATGAGCCATGTAA--ATTTGTGTATCTACTGCTCAGCTCAGCCTGACACCAT-GTTT 216 * * * * * * **** **** * * ** * ** * * * * consensus_437#0 CTAAAGGAGCCTTGTGATCACTTAAAAAACAAAAGCTCTGTT--CCAAATACACAATATT 293 consensus_437#1 CCAAAGCAGATGTGCAGAAATGTCTGCTACACCAGCGTGAACAGTCAGAGTCACGACAAG 276 * **** ** ** * * *** *** ** * *** * * consensus_437#0 TATCAGCCTTTTAATTTGTCAAAAGCTAT-TATTCACAGCAACTCAAAATCCACTTTACT 352 consensus_437#1 CTTT-GTCTCCCCAGCTGCCGGTGGTGATGCGTGTGCCGCGCTTCTCGGCCTG---GGCT 332 * * ** * ** * * ** * * ** ** * ** consensus_437#0 TTCAACATTCAGGTGATCGAAACCGTATCTTCCCTTGCATTGCAAATATAGT-ATTAAAA 411 consensus_437#1 CTGAACATGTGCGGGATGCAGTTCT--CCATTCTTGGTTTTGGAGATATCATCGTTCCAG 390 * ***** * *** * * * * * * * *** * **** * ** * consensus_437#0 AGCATCCAGCAGTTTTGT-CTGTGATCAACACATCAGCATTTTTGTCCTATGGAGCAGTC 470 consensus_437#1 GTCTCTTGGTAGCCTACTGCAGCAGATTTGACGTCCGGATCAACAGCAGAAACAAGGTCT 450 * * ** * * * * ** ** * ** * * * consensus_437#0 AGTTCTTCC-CTCTGGCAGCAAAGGTCCCCTTG--ATGATTCCAAGACCTCATAGGTGGT 527 consensus_437#1 ACTTCATCAGCTCCTGCATAGCTTATCTGCTGGGAATAATCATGACATTTGCTGTGATGC 510 * *** ** *** *** ** ** * ** ** * * * * * * consensus_437#0 TCCTGTCCAGAACTGCCTCATCT-CTTTCCTGTAGCCAGCCACTGCAGCGGCGGTGATCA 586 consensus_437#1 TGCTGTCTGGAATGGGCCAGCCTGCCTTGCTCTACCTGGTTCCCTTCACCCTGATC---- 566 * ***** *** * * ** * ** ** ** * * * * * * consensus_437#0 GGGTGAAGGGAACCAGGTA 605 consensus_437#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |